Detailed information    

insolico Bioinformatically predicted

Overview

Name   dprA   Type   Machinery gene
Locus tag   V6D45_RS08620 Genome accession   NZ_CP145722
Coordinates   1685276..1686169 (+) Length   297 a.a.
NCBI ID   WP_041520950.1    Uniprot ID   A0A9Q4HLA1
Organism   Bacillus spizizenii strain kcgeb_S11     
Function   ssDNA binding; loading RecA onto ssDNA (predicted from homology)   
DNA processing

Genomic Context

Location: 1680276..1691169
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  V6D45_RS08600 (V6D45_08605) - 1680945..1682675 (+) 1731 WP_338444340.1 hypothetical protein -
  V6D45_RS08605 (V6D45_08610) - 1682672..1682953 (+) 282 WP_014113777.1 FlhB-like flagellar biosynthesis protein -
  V6D45_RS08610 (V6D45_08615) sucC 1683127..1684284 (+) 1158 WP_019714397.1 ADP-forming succinate--CoA ligase subunit beta -
  V6D45_RS08615 (V6D45_08620) sucD 1684313..1685215 (+) 903 WP_003238566.1 succinate--CoA ligase subunit alpha -
  V6D45_RS08620 (V6D45_08625) dprA 1685276..1686169 (+) 894 WP_041520950.1 DNA-processing protein DprA Machinery gene
  V6D45_RS08625 (V6D45_08630) topA 1686356..1688431 (+) 2076 WP_338444341.1 type I DNA topoisomerase -
  V6D45_RS08630 (V6D45_08635) trmFO 1688507..1689814 (+) 1308 WP_338444342.1 FADH(2)-oxidizing methylenetetrahydrofolate--tRNA-(uracil(54)-C(5))- methyltransferase TrmFO -
  V6D45_RS08635 (V6D45_08640) xerC 1689882..1690796 (+) 915 WP_014113784.1 tyrosine recombinase XerC -

Sequence

Protein


Download         Length: 297 a.a.        Molecular weight: 32939.36 Da        Isoelectric Point: 9.9037

>NTDB_id=939673 V6D45_RS08620 WP_041520950.1 1685276..1686169(+) (dprA) [Bacillus spizizenii strain kcgeb_S11]
MDQAAACLMICRINQLLSPSLLLKWWKADPSMSLTSPVLETVTRGKIKAAALKNKIEEQYPKLQRVLAAYHEQGINPIPI
SSKQYPFWLKTIYDPPAVLFAKGDMTLLSKGRKIGIVGTRNPTAYGIQIVNHLTKELCRKNWVIVSGLASGIDGMSHAAS
IKAKGRTIGVIAGGFQHIYPRENLQLADHMAKHHILLSEHPPETKPQKWHFPMRNRIISGLSEGVIVVQGKEKSGSLITA
YQALEQGREVFAVPGSLFDPYAGGPIKLIQQGAKAIWSAEDIFEELPERNVQYTEPF

Nucleotide


Download         Length: 894 bp        

>NTDB_id=939673 V6D45_RS08620 WP_041520950.1 1685276..1686169(+) (dprA) [Bacillus spizizenii strain kcgeb_S11]
TTGGATCAGGCCGCTGCCTGTTTAATGATTTGCAGAATCAATCAATTATTATCCCCATCCCTTCTATTAAAATGGTGGAA
AGCTGATCCGTCTATGTCGCTGACGTCACCCGTGTTAGAAACTGTTACTCGAGGTAAAATAAAGGCAGCTGCATTAAAAA
ATAAAATAGAAGAACAATATCCAAAGCTTCAGCGTGTACTTGCTGCTTACCATGAGCAAGGAATTAACCCCATCCCGATT
TCTTCAAAGCAATATCCTTTCTGGCTGAAAACCATTTATGATCCCCCCGCCGTCCTGTTTGCAAAGGGTGATATGACCCT
TCTTTCTAAAGGGAGGAAAATTGGAATTGTAGGGACAAGAAATCCAACAGCTTATGGGATACAAATTGTCAATCATCTTA
CAAAAGAGCTCTGCCGTAAAAATTGGGTGATTGTCAGCGGACTGGCGTCTGGGATAGACGGAATGTCCCATGCTGCAAGT
ATTAAGGCGAAGGGGCGGACAATCGGCGTCATTGCAGGCGGATTTCAACACATTTATCCCCGGGAAAACCTTCAGTTAGC
AGATCATATGGCTAAACACCATATCCTTCTGTCAGAGCACCCACCTGAAACCAAACCCCAAAAATGGCATTTCCCTATGA
GAAACCGTATTATCAGCGGATTAAGTGAAGGCGTTATTGTCGTGCAGGGCAAAGAAAAAAGTGGTTCGCTGATTACTGCA
TATCAAGCACTGGAACAAGGAAGAGAAGTATTTGCCGTACCCGGCTCATTATTTGATCCTTACGCCGGAGGTCCTATAAA
ACTGATCCAGCAGGGGGCTAAAGCTATATGGTCAGCAGAGGATATTTTCGAGGAGCTTCCTGAGAGAAACGTTCAATATA
CGGAACCCTTTTGA

Domains

Predicted by InterproScan.

DNA recombination-mediator protein A (DNA_processg_A)

(71-276)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  dprA Bacillus subtilis subsp. subtilis str. 168

94.613

100

0.946