Detailed information    

insolico Bioinformatically predicted

Overview

Name   rarA   Type   Machinery gene
Locus tag   ACEYZN_RS00275 Genome accession   NZ_CP169375
Coordinates   60808..62073 (+) Length   421 a.a.
NCBI ID   WP_001285405.1    Uniprot ID   -
Organism   Acinetobacter baumannii strain H3     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 55808..67073
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACEYZN_RS00245 (ACEYZN_00245) mutY 55977..57011 (-) 1035 WP_001113878.1 A/G-specific adenine glycosylase -
  ACEYZN_RS00250 (ACEYZN_00250) - 57152..57514 (-) 363 WP_000130110.1 HIT family protein -
  ACEYZN_RS00255 (ACEYZN_00255) - 57700..58437 (-) 738 WP_000100769.1 dienelactone hydrolase family protein -
  ACEYZN_RS00260 (ACEYZN_00260) - 58609..58767 (-) 159 WP_000490267.1 DUF1328 domain-containing protein -
  ACEYZN_RS00265 (ACEYZN_00265) - 58962..59420 (+) 459 WP_000102817.1 YcgN family cysteine cluster protein -
  ACEYZN_RS00270 (ACEYZN_00270) - 59533..60702 (+) 1170 WP_002040427.1 PQQ-dependent sugar dehydrogenase -
  ACEYZN_RS00275 (ACEYZN_00275) rarA 60808..62073 (+) 1266 WP_001285405.1 replication-associated recombination protein A Machinery gene
  ACEYZN_RS00280 (ACEYZN_00280) - 62088..62927 (-) 840 WP_000349497.1 formate/nitrite transporter family protein -
  ACEYZN_RS00285 (ACEYZN_00285) - 63213..63416 (-) 204 WP_000418560.1 hypothetical protein -
  ACEYZN_RS00290 (ACEYZN_00290) purC 63609..64328 (-) 720 WP_000917863.1 phosphoribosylaminoimidazolesuccinocarboxamide synthase -
  ACEYZN_RS00295 (ACEYZN_00295) - 64366..64968 (-) 603 WP_001177091.1 hypothetical protein -
  ACEYZN_RS00300 (ACEYZN_00300) dapA 64984..65877 (-) 894 WP_000193600.1 4-hydroxy-tetrahydrodipicolinate synthase -
  ACEYZN_RS00305 (ACEYZN_00305) pncA 66207..66851 (+) 645 WP_002020317.1 bifunctional nicotinamidase/pyrazinamidase -

Sequence

Protein


Download         Length: 421 a.a.        Molecular weight: 46946.67 Da        Isoelectric Point: 6.0204

>NTDB_id=939054 ACEYZN_RS00275 WP_001285405.1 60808..62073(+) (rarA) [Acinetobacter baumannii strain H3]
MSDTHIPLPERLRPRDLSEIIGQDHLLGEHAPLRQMIDQGHLPSIIFWGPPGVGKTTIALLLAQAIDRPFVSLSALNTGV
KELREVIAESGDLLTPVVFIDEIHRFNKSQQDALLGAVEKGKITLIGATTENPSFEVNSALLSRCQVYTLNSLDSEAIQT
LLNNALQKDKFLKERYIHIEEYDALLQFAAGDARKALNLLDLIASTFEPEVENTITNAVVVKVAQQNIARYDKSGEQHYD
LVSAFIKSIRGSDPDAALYWMARMLKGGEDPVFIARRMLIAASEDIGNSNPNALLLAGECFRSVQAVGMPEARIILGQTA
VYLATSAKSNSTYLAINKALELAEKTANLPVPLHLRNAPTKLMKQQGYGINYLYPHDYPEHFVLQDYLPPELKGTKLYES
ARNKREVEGERLQQRRWQQEQ

Nucleotide


Download         Length: 1266 bp        

>NTDB_id=939054 ACEYZN_RS00275 WP_001285405.1 60808..62073(+) (rarA) [Acinetobacter baumannii strain H3]
ATGTCAGACACCCATATTCCACTTCCTGAACGCCTGCGCCCGAGAGACTTGTCTGAAATTATTGGGCAAGATCATTTGTT
AGGTGAACATGCGCCCTTACGTCAAATGATTGATCAGGGGCATTTGCCTTCTATTATTTTTTGGGGGCCGCCAGGCGTCG
GTAAAACGACAATTGCTTTGCTTTTAGCTCAGGCAATAGATCGTCCATTTGTGAGCTTATCTGCGCTGAATACGGGCGTA
AAAGAATTACGTGAAGTAATTGCAGAAAGTGGTGACTTACTGACACCTGTAGTTTTTATTGACGAAATCCATCGCTTTAA
TAAATCACAGCAAGATGCATTATTAGGTGCCGTAGAAAAAGGTAAAATTACATTAATTGGCGCCACCACTGAAAACCCGT
CTTTTGAAGTCAATAGTGCACTTTTATCACGCTGTCAGGTCTATACCTTAAACAGTTTAGACAGTGAAGCAATTCAGACG
CTACTTAACAATGCACTCCAAAAAGATAAATTTTTAAAAGAACGTTATATTCATATTGAAGAGTATGATGCTCTTTTACA
GTTTGCAGCAGGTGATGCCCGTAAAGCACTCAATTTACTTGACTTAATTGCAAGTACTTTTGAGCCCGAAGTTGAAAATA
CGATTACCAATGCAGTTGTAGTAAAAGTCGCTCAGCAAAATATTGCGCGTTATGACAAATCGGGTGAACAGCATTACGAC
CTCGTTTCTGCCTTTATTAAATCGATTCGTGGTAGTGATCCGGATGCGGCTTTGTACTGGATGGCGCGGATGCTTAAAGG
TGGGGAAGATCCGGTTTTTATTGCAAGACGTATGTTGATTGCCGCTTCAGAAGACATTGGAAACTCGAATCCAAATGCAC
TATTGCTTGCAGGTGAATGTTTCCGTTCTGTACAGGCGGTGGGAATGCCGGAGGCTCGAATTATTTTGGGTCAAACAGCA
GTTTATTTAGCGACCAGTGCAAAAAGTAATAGTACTTACCTCGCGATTAATAAGGCGCTAGAACTTGCTGAGAAAACGGC
AAATTTACCAGTACCTTTACACTTGAGAAATGCGCCAACCAAGCTGATGAAACAGCAAGGTTATGGGATTAATTATCTCT
ATCCTCATGACTACCCTGAGCACTTTGTACTACAAGACTACTTGCCACCTGAGTTAAAGGGAACCAAACTCTATGAGTCG
GCAAGAAACAAGCGTGAAGTTGAAGGTGAACGCCTACAACAACGCAGATGGCAGCAGGAACAATAG

Domains

Predicted by InterProScan.

ATPase family associated with various cellular activities (AAA) (AAA)

(45-147)

AAA C-terminal domain (AAA_assoc_2)

(181-250)

MgsA AAA+ ATPase C terminal (MgsA_C)

(251-410)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rarA Bacillus subtilis subsp. subtilis str. 168

40.75

95.012

0.387