Detailed information    

insolico Bioinformatically predicted

Overview

Name   recD2   Type   Machinery gene
Locus tag   V6S17_RS04310 Genome accession   NZ_CP145608
Coordinates   848402..850780 (+) Length   792 a.a.
NCBI ID   WP_029091220.1    Uniprot ID   -
Organism   Brochothrix thermosphacta DSM 20171 = FSL F6-1036 strain DSM 20171     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 843402..855780
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  V6S17_RS04295 (V6S17_04295) - 844434..845576 (+) 1143 WP_029091217.1 cysteine desulfurase family protein -
  V6S17_RS04300 (V6S17_04300) mnmA 845592..846710 (+) 1119 WP_029091218.1 tRNA 2-thiouridine(34) synthase MnmA -
  V6S17_RS04305 (V6S17_04305) - 847718..848380 (+) 663 WP_029091219.1 tetratricopeptide repeat protein -
  V6S17_RS04310 (V6S17_04310) recD2 848402..850780 (+) 2379 WP_029091220.1 ATP-dependent RecD-like DNA helicase Machinery gene
  V6S17_RS04315 (V6S17_04315) - 851110..851532 (+) 423 WP_029091221.1 organic hydroperoxide resistance protein -
  V6S17_RS04320 (V6S17_04320) - 851561..851995 (+) 435 WP_029091222.1 MarR family transcriptional regulator -
  V6S17_RS04325 (V6S17_04325) - 851988..852644 (+) 657 WP_029091223.1 nitroreductase family protein -
  V6S17_RS04330 (V6S17_04330) - 852648..853022 (+) 375 WP_029091224.1 DUF1304 domain-containing protein -
  V6S17_RS04335 (V6S17_04335) - 853066..853596 (-) 531 WP_029091225.1 hypothetical protein -
  V6S17_RS04340 (V6S17_04340) - 853697..855109 (-) 1413 WP_029091226.1 HAMP domain-containing sensor histidine kinase -

Sequence

Protein


Download         Length: 792 a.a.        Molecular weight: 88512.80 Da        Isoelectric Point: 4.8260

>NTDB_id=939039 V6S17_RS04310 WP_029091220.1 848402..850780(+) (recD2) [Brochothrix thermosphacta DSM 20171 = FSL F6-1036 strain DSM 20171]
MTDTMNTSEGENIPPYVKGNVVTTIFHNATNLFSVLRMEVKESNVEWDDREIVITGYLPELSQEDRYHLEGTVSEHPKYG
RQFQVTTFRKEMPATKAGVSTYLSGEMFKGVGKKTAERIVDILGNDAISRILQDPTVLDQVPKLTTKLKESLAKTLQENE
GIELVMIKLNEMGFGPQLAMRIFQTYQQKTMEVINENPYQLIHDVTGIGFNRADELGQKIGMGGNHPSRLSAALMFTVDS
ESMQNGHVYMEYDETVLATKRLLLSSNGSSVIAENEISDALQELLQNNELVQEETRIYLPSLYHAEKGVAHHLMRLEKAQ
AKRTTFPKSEFLKALGELEERINVTYAPSQSDAIETALNSSTMILTGGPGTGKTTVIKGIVELFAELNGVSLDPSEYKDG
KTFPVVLAAPTGRAAKRMSESTNLPAMTIHRLLGMTGQENKSEDVDRDIEGQLLIIDETSMVDIWLANQLLRAVPTNMQV
IFVGDKDQLPSVGPGQFLKDILKSEVIPTISLTEIYRQAEGSSIIELAHHVKDGVLPADFTENQSDRSFFRCNTQQLSEV
VGQVVKNAVKKGFTSKDIQVLIPMYRGPAGINKMNEELQEILNPNPEGKRKEITYGDVIYRVGDKVLQLVNQPESNVFNG
DMGTIVSIIYAKETVEKQDTLVIEFDQTEVTYLRGDLNQITHAYCCSVHKAQGSEFPIVILPLLKSYYRMLRRDILYTAM
TRSRQFLIMCGEEDAFAQATVRQSDVARQTSLFERLTRTTAELEPVNEAGEYILTPENIHSIDPMIGMVESP

Nucleotide


Download         Length: 2379 bp        

>NTDB_id=939039 V6S17_RS04310 WP_029091220.1 848402..850780(+) (recD2) [Brochothrix thermosphacta DSM 20171 = FSL F6-1036 strain DSM 20171]
ATGACGGATACAATGAACACATCAGAGGGTGAAAATATACCACCGTATGTTAAAGGCAATGTGGTCACCACCATCTTTCA
TAATGCCACTAACTTGTTTTCTGTGTTGCGTATGGAAGTGAAAGAAAGTAATGTCGAATGGGATGACCGTGAAATTGTCA
TCACCGGTTATCTACCAGAACTTTCACAAGAAGACCGTTATCATTTAGAAGGAACGGTATCAGAACATCCAAAGTATGGA
CGACAGTTTCAGGTCACAACTTTCAGAAAAGAAATGCCTGCTACTAAGGCGGGTGTTTCTACTTATTTATCTGGAGAAAT
GTTCAAAGGTGTCGGTAAAAAGACTGCTGAACGAATTGTCGATATACTAGGTAACGATGCCATTTCACGGATTTTACAAG
ATCCAACTGTGTTAGATCAAGTCCCAAAATTAACAACAAAATTAAAAGAATCATTAGCCAAAACACTTCAAGAAAATGAA
GGCATTGAATTGGTGATGATTAAACTTAATGAAATGGGATTTGGTCCCCAATTAGCGATGCGTATTTTTCAAACATACCA
ACAAAAAACGATGGAAGTTATTAATGAAAATCCGTATCAATTGATTCATGATGTCACAGGTATCGGCTTTAATCGTGCGG
ATGAACTGGGCCAAAAAATTGGTATGGGTGGTAATCATCCTTCTCGTTTAAGTGCAGCACTGATGTTTACGGTTGATTCG
GAAAGTATGCAAAACGGTCATGTTTATATGGAATATGATGAAACGGTATTAGCTACAAAGCGTTTATTATTAAGTAGTAA
TGGCTCTTCTGTCATTGCGGAAAATGAAATTAGTGACGCATTGCAAGAACTATTACAAAATAATGAGCTTGTGCAAGAAG
AGACACGCATCTATTTACCATCGTTGTATCATGCCGAAAAAGGTGTCGCACATCATTTAATGCGACTTGAAAAAGCACAG
GCGAAGCGTACAACTTTTCCGAAGTCAGAGTTTTTAAAAGCGCTTGGTGAATTGGAAGAACGTATTAATGTAACCTATGC
ACCGTCTCAAAGTGATGCGATTGAAACAGCTTTAAATTCGTCAACAATGATTTTAACAGGTGGACCAGGTACAGGTAAAA
CAACTGTTATTAAAGGGATTGTTGAATTGTTTGCTGAATTAAATGGCGTTAGTCTAGATCCAAGTGAATATAAAGATGGA
AAAACATTCCCTGTCGTTTTGGCAGCACCCACGGGACGAGCAGCAAAACGTATGAGTGAATCGACTAATCTACCTGCGAT
GACAATTCATCGTTTATTGGGGATGACAGGTCAAGAAAATAAGTCTGAAGATGTTGATCGTGATATTGAAGGACAATTGC
TTATTATCGATGAAACAAGTATGGTTGATATTTGGCTAGCAAACCAACTGTTGCGAGCTGTGCCAACTAATATGCAGGTT
ATTTTTGTCGGTGATAAAGACCAGTTGCCATCAGTAGGGCCGGGTCAGTTTTTAAAAGATATTTTAAAATCAGAAGTCAT
TCCAACAATTTCGCTAACAGAAATTTATCGACAAGCAGAAGGCTCATCGATTATTGAATTGGCTCACCATGTAAAAGATG
GCGTTTTGCCTGCTGATTTTACTGAAAATCAGTCAGATCGTTCGTTTTTCCGTTGTAATACACAACAGTTGTCAGAAGTA
GTGGGGCAAGTGGTTAAAAATGCCGTGAAAAAAGGTTTTACTTCTAAGGATATTCAAGTGTTGATCCCGATGTATCGTGG
TCCTGCTGGAATTAATAAAATGAATGAAGAGCTGCAGGAAATTTTAAATCCTAACCCTGAGGGTAAGCGGAAAGAAATAA
CCTATGGCGATGTGATTTATCGTGTGGGTGATAAAGTGCTGCAACTTGTTAATCAGCCTGAGAGTAACGTTTTTAATGGT
GATATGGGAACAATTGTATCAATTATCTATGCGAAGGAAACCGTCGAAAAACAAGATACGCTTGTCATTGAATTTGATCA
AACAGAAGTGACATACTTACGCGGTGATTTGAACCAAATTACGCATGCCTATTGTTGCTCTGTGCATAAAGCACAAGGAT
CTGAATTCCCAATTGTTATTTTACCGTTATTAAAAAGTTATTATCGAATGTTACGCCGTGATATTTTATACACAGCGATG
ACTAGAAGTCGGCAATTTTTAATTATGTGTGGCGAAGAAGATGCCTTTGCGCAAGCGACAGTGAGGCAATCAGATGTTGC
ACGACAAACATCTTTATTTGAACGACTTACTCGCACAACTGCAGAGTTAGAACCGGTGAATGAAGCAGGAGAATATATTT
TAACACCTGAAAATATTCATTCAATTGACCCAATGATTGGTATGGTAGAGAGTCCGTAG

Domains

Predicted by InterproScan.

Helix-hairpin-helix containing domain (HHH_RecD2)

(158-249)

UvrD-like helicase C-terminal domain (UvrD_C_2)

(682-730)

ATP-dependent RecD-like DNA helicase SH3 domain (SH3_13)

(594-665)

AAA domain (AAA_30)

(346-553)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recD2 Bacillus subtilis subsp. subtilis str. 168

55.613

97.854

0.544