Detailed information    

insolico Bioinformatically predicted

Overview

Name   rcrP   Type   Regulator
Locus tag   V6B37_RS01740 Genome accession   NZ_CP145536
Coordinates   445025..446893 (+) Length   622 a.a.
NCBI ID   WP_052787459.1    Uniprot ID   -
Organism   Bifidobacterium breve strain TCI761     
Function   regulate competence (predicted from homology)   
Competence regulation

Genomic Context

Location: 440025..451893
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  V6B37_RS01730 (V6B37_01730) - 441879..443402 (+) 1524 WP_124880348.1 amino acid permease -
  V6B37_RS01735 (V6B37_01735) - 444320..444841 (+) 522 WP_338515467.1 MarR family transcriptional regulator -
  V6B37_RS01740 (V6B37_01740) rcrP 445025..446893 (+) 1869 WP_052787459.1 ABC transporter ATP-binding protein Regulator
  V6B37_RS01745 (V6B37_01745) rcrQ 447025..448854 (+) 1830 WP_019727589.1 ABC transporter ATP-binding protein Regulator
  V6B37_RS01750 (V6B37_01750) - 448863..449804 (-) 942 WP_065452812.1 FAD:protein FMN transferase -
  V6B37_RS01755 (V6B37_01755) - 449909..451327 (+) 1419 WP_141670525.1 MFS transporter -

Sequence

Protein


Download         Length: 622 a.a.        Molecular weight: 68123.73 Da        Isoelectric Point: 5.1129

>NTDB_id=938908 V6B37_RS01740 WP_052787459.1 445025..446893(+) (rcrP) [Bifidobacterium breve strain TCI761]
MFRIMKYLSKAEIGQMLIALVSIVGQIWFDLELPDYMSDITTLVETPGSAMADIWVAGGKMLLVSLGSVACAIITGYIAA
RVASSFGQRLRSLEFRKVESFGPAEMSKFSTASLITRSTNDITQIQMFITMGLQLIVKSPIMAVWAVCKIAGEGFEWTVA
TAIAVVILLVAVVILMAMVMPKFKAMQRLTDNINLVARENLTGLRVVRAYNAEDYQESKFTKANKDLTDTQLFTNRTMAI
MMPLMNTVMNGLMLAVYWIGAYLIEAAELTDKLTVFSNMVVFSSYSVQVIMSFLLMSMVFVLWPRADVSAQRVMEVLNTE
PIVKNGTKRAADIAKTGQTGTVEFRNVSFTYPDSREAMLQDINFKAEKGQTVAFIGSTGSGKSSLINLVPRFYDVSAGQV
LVDGVDVRDYDMVALRDKIGYVPQRSVLFKGTVAGNISYGDKPGENDTVELADTSTPAGRKREALQLAADAANDGKLTDE
QMSRVKAAADVAQASEFVNRMDGGFDSPIAQGGSNVSGGQKQRLSIARAVYRHPEILIFDDSFSALDFKTDRAVRDALAE
EAKDSTKLIVAQRIGTIMNADRIVVLDEGKVVGQGTHKELLENCEVYRQIAESQLSESELTA

Nucleotide


Download         Length: 1869 bp        

>NTDB_id=938908 V6B37_RS01740 WP_052787459.1 445025..446893(+) (rcrP) [Bifidobacterium breve strain TCI761]
ATGTTTCGCATCATGAAATACCTCTCCAAAGCGGAGATCGGTCAGATGCTTATCGCCTTAGTGTCCATCGTCGGGCAAAT
CTGGTTCGACCTCGAACTGCCCGATTATATGTCAGACATCACCACCCTGGTCGAAACGCCGGGCAGCGCAATGGCGGACA
TCTGGGTCGCCGGCGGCAAAATGCTGCTGGTCTCGCTCGGCTCGGTCGCCTGCGCGATCATCACCGGTTACATCGCGGCG
CGCGTGGCCTCCAGCTTCGGCCAGCGCCTGCGCTCGCTCGAATTCCGTAAGGTCGAATCCTTCGGCCCGGCCGAAATGAG
CAAGTTCTCCACGGCCAGCCTCATCACCCGCTCCACCAACGACATCACGCAAATCCAGATGTTCATCACCATGGGTCTGC
AGCTCATTGTCAAGTCGCCGATCATGGCCGTGTGGGCTGTCTGCAAGATTGCCGGCGAGGGCTTCGAATGGACGGTCGCC
ACGGCCATAGCGGTCGTGATCCTGCTGGTCGCTGTCGTAATCCTCATGGCGATGGTCATGCCGAAGTTCAAGGCCATGCA
GAGGCTCACCGATAACATCAACCTCGTGGCCCGCGAGAATCTCACTGGTCTGCGGGTGGTGCGCGCCTACAACGCCGAGG
ACTACCAGGAGTCCAAATTCACCAAGGCGAACAAGGATCTGACCGATACGCAGCTGTTCACCAACCGCACCATGGCCATC
ATGATGCCGCTGATGAACACTGTGATGAACGGCCTTATGCTCGCCGTCTACTGGATTGGCGCCTACCTGATCGAGGCCGC
CGAGCTTACCGACAAGCTCACCGTGTTCTCCAACATGGTGGTGTTCTCCAGCTACTCCGTGCAGGTGATTATGAGCTTCC
TGCTGATGAGCATGGTATTCGTGCTTTGGCCTCGTGCCGACGTGTCCGCGCAGCGCGTGATGGAAGTGTTGAACACCGAG
CCGATTGTGAAAAACGGCACCAAGCGCGCGGCCGATATCGCAAAGACCGGTCAGACCGGCACCGTGGAATTCAGGAACGT
GAGCTTTACCTACCCGGATTCGCGTGAGGCCATGCTGCAGGATATCAACTTCAAAGCCGAGAAGGGCCAGACCGTGGCGT
TCATCGGCTCTACCGGCTCGGGCAAGTCGTCGCTGATTAATCTCGTGCCGCGCTTCTACGACGTGTCCGCCGGGCAAGTG
CTCGTCGACGGTGTGGACGTGCGCGACTATGACATGGTCGCCCTACGCGACAAGATCGGCTACGTGCCGCAGCGCTCCGT
ATTGTTCAAGGGCACCGTGGCCGGCAACATCAGCTACGGCGACAAGCCCGGAGAGAACGACACGGTCGAACTCGCGGATA
CCTCCACTCCCGCCGGCCGTAAGCGTGAGGCGCTTCAGCTGGCCGCCGATGCCGCCAACGACGGCAAGTTGACAGACGAA
CAGATGAGCCGTGTCAAGGCCGCTGCCGACGTGGCCCAGGCCAGCGAATTCGTCAACCGCATGGACGGCGGATTCGATTC
GCCGATCGCACAAGGCGGCTCGAACGTGTCCGGTGGCCAGAAGCAGCGTCTGTCCATCGCCCGCGCCGTCTACCGTCATC
CGGAAATCCTGATTTTCGATGACTCGTTCTCTGCGCTCGACTTCAAAACCGACCGTGCGGTGCGAGACGCGCTCGCCGAG
GAAGCCAAGGATTCCACCAAGCTCATCGTGGCCCAGCGCATCGGCACGATCATGAACGCCGATCGCATCGTGGTGCTTGA
CGAGGGCAAGGTTGTGGGGCAAGGCACACACAAGGAGTTGCTCGAGAACTGCGAAGTGTACCGACAGATTGCCGAATCCC
AGCTGAGTGAATCGGAACTGACTGCGTAA

Domains

Predicted by InterproScan.

ABC transporter (ABC_tran)

(359-542)

ABC transporter transmembrane region (ABC_membrane)

(53-292)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rcrP Streptococcus mutans UA159

48.576

100

0.494