Detailed information    

insolico Bioinformatically predicted

Overview

Name   comF   Type   Machinery gene
Locus tag   SNR28_RS10020 Genome accession   NZ_CP145311
Coordinates   115815..116525 (-) Length   236 a.a.
NCBI ID   WP_375752173.1    Uniprot ID   -
Organism   Vibrio sp. HN007     
Function   ssDNA transport into the cell (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 110815..121525
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  SNR28_RS09990 (SNR28_09980) gspL 111027..112241 (+) 1215 WP_375752164.1 type II secretion system protein GspL -
  SNR28_RS09995 (SNR28_09985) - 112238..112732 (+) 495 WP_375752165.1 type II secretion system protein M -
  SNR28_RS10000 (SNR28_09990) - 112734..113492 (+) 759 WP_375752166.1 type II secretion system protein N -
  SNR28_RS10005 (SNR28_09995) nudE 113542..114099 (+) 558 WP_375752168.1 ADP compounds hydrolase NudE -
  SNR28_RS10010 (SNR28_10000) cysQ 114110..114931 (+) 822 WP_375752169.1 3'(2'),5'-bisphosphate nucleotidase CysQ -
  SNR28_RS10015 (SNR28_10005) nfuA 115141..115728 (-) 588 WP_375752171.1 Fe-S biogenesis protein NfuA -
  SNR28_RS10020 (SNR28_10010) comF 115815..116525 (-) 711 WP_375752173.1 ComF family protein Machinery gene
  SNR28_RS10025 (SNR28_10015) bioH 116615..117382 (+) 768 WP_375752175.1 pimeloyl-ACP methyl ester esterase BioH -
  SNR28_RS10030 (SNR28_10020) - 117516..117986 (+) 471 WP_375752177.1 ATP-dependent Lon protease -
  SNR28_RS10035 (SNR28_10025) - 118040..120385 (-) 2346 WP_375752178.1 Tex family protein -

Sequence

Protein


Download         Length: 236 a.a.        Molecular weight: 27167.17 Da        Isoelectric Point: 7.8924

>NTDB_id=938397 SNR28_RS10020 WP_375752173.1 115815..116525(-) (comF) [Vibrio sp. HN007]
MLSNWIRNKIHSHCTSQCDLCGLTINQPDSHLIWCEHCIRYFSPLPRCQCCGLTTITQVEKCDRCIKEPPAWRRLYCVDD
HQPPLSNYISQLKYSNNYKIAYDLTALLAQQIGNPAPTLLPVPLHWKRLAQRGYNQSEVLANFLAQHLPNSPTVERDIFL
RSKSTPPQQGLRYEDRQRNLEGAFKLNRLPKSNHVAIIDDVVTTGSTVRHLCNLLLEFEIEKIDIYCISRTPEPDG

Nucleotide


Download         Length: 711 bp        

>NTDB_id=938397 SNR28_RS10020 WP_375752173.1 115815..116525(-) (comF) [Vibrio sp. HN007]
ATGCTCTCAAACTGGATCAGAAACAAAATACATAGCCATTGTACCTCTCAATGCGATTTATGTGGTCTCACCATTAACCA
GCCCGATAGCCACCTTATTTGGTGTGAACACTGCATTCGTTACTTCTCACCTCTACCTCGGTGTCAGTGTTGTGGATTAA
CAACCATTACGCAGGTTGAGAAATGCGATCGTTGCATCAAAGAACCACCAGCATGGCGACGACTTTATTGTGTTGATGAT
CATCAGCCACCGCTATCCAACTACATATCGCAACTAAAATACTCAAACAACTATAAAATAGCTTATGACCTAACCGCATT
GCTTGCACAGCAGATTGGGAATCCGGCACCAACACTACTCCCGGTTCCGCTTCACTGGAAAAGGCTAGCCCAGCGCGGAT
ACAACCAAAGTGAGGTTCTGGCAAACTTTCTAGCTCAACATCTTCCAAACTCCCCTACCGTTGAGCGGGATATTTTTCTC
CGAAGCAAATCTACACCGCCTCAGCAGGGATTACGTTACGAAGACAGACAACGAAATCTTGAAGGCGCGTTTAAGCTTAA
TCGGCTACCAAAAAGCAATCATGTTGCAATCATTGACGATGTGGTCACAACAGGCAGTACGGTACGACATTTATGCAACT
TACTGCTTGAATTTGAAATAGAAAAAATTGATATTTACTGTATATCCCGTACTCCTGAACCCGATGGTTAA

Domains

Predicted by InterproScan.

Phosphoribosyl transferase domain (Pribosyltran)

(137-229)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comF Vibrio cholerae strain A1552

48.729

100

0.487
  comF Vibrio campbellii strain DS40M4

44.583

100

0.453