Detailed information NTG0938206

Bioinformatically predicted

Overview

• Name: recD2
• Type: Machinery gene
• Locus tag: V6C62_RS06110
• Genome accession: NZ_CP145249
• Coordinates: 1237111..1239561 (+)
• Length: 816 a.a.
• NCBI ID: WP_367140465.1
• Uniprot ID: -
• Organism: Staphylococcus capitis subsp. urealyticus strain Sc1365666
• Function: homologous recombination (predicted from homology) Homologous recombination

Genomic Context

Location: 1232111..1244561

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
V6C62_RS06085 (V6C62_06085)	-	1232628..1232768 (+)	141	WP_002436115.1	SAS049 family protein	-
V6C62_RS06090 (V6C62_06090)	-	1232822..1233817 (-)	996	WP_023350159.1	LLM class flavin-dependent oxidoreductase	-
V6C62_RS06095 (V6C62_06095)	-	1234078..1235220 (+)	1143	WP_002436113.1	cysteine desulfurase family protein	-
V6C62_RS06100 (V6C62_06100)	mnmA	1235220..1236338 (+)	1119	WP_002436098.1	tRNA 2-thiouridine(34) synthase MnmA	-
V6C62_RS06105 (V6C62_06105)	-	1236441..1237100 (+)	660	WP_213667878.1	tetratricopeptide repeat protein	-
V6C62_RS06110 (V6C62_06110)	recD2	1237111..1239561 (+)	2451	WP_367140465.1	ATP-dependent RecD-like DNA helicase	Machinery gene
V6C62_RS06115 (V6C62_06115)	alaS	1239901..1242531 (+)	2631	WP_023350161.1	alanine--tRNA ligase	-
V6C62_RS06120 (V6C62_06120)	-	1242595..1242855 (+)	261	WP_002435994.1	IreB family regulatory phosphoprotein	-
V6C62_RS06125 (V6C62_06125)	ruvX	1242857..1243285 (+)	429	WP_002435990.1	Holliday junction resolvase RuvX	-
V6C62_RS06130 (V6C62_06130)	-	1243299..1243619 (+)	321	WP_023350162.1	DUF1292 domain-containing protein	-

Sequence

Protein

• Length: 816 a.a.
• Molecular weight: 91854.23 Da
• Isoelectric Point: 4.6342

>NTDB_id=938206 V6C62_RS06110 WP_367140465.1 1237111..1239561(+) (recD2) [Staphylococcus capitis subsp. urealyticus strain Sc1365666]
MSDPTLFDKSMIKGTVDAILFQNNDNFYTVLKVDTIETNESFDSMPTVVGFLPNVVEGDVYTFKGQIVDHPRYGKQLKAE
TFEKELPQTKEAIISYLSSDLFKGIGKKTAQNIVNALGENAINDILNNPEVLEKVPSLPKKKQKQIAEQISSNQESEKIM
IRLHDLGFGPKLSMAIYQFYMGDTLKILDENPYQLVYDIKGIGFNKADQLARNIGIAADSEERLKAGLLYTLEEECIKQG
HTYLPNSYVIESTQTMLNDSSEVVISTKMLEQKIEQLSEEKKLIQSEEQVSIPSLYYSELKSVQNLYRIQTNNKKLKEIE
QSDLQMHIGEIESLNQVNYATSQKEALETAINSKVMLLTGGPGTGKTTVIKGIVELYAEIHGLSLDYDDYNEDDYPVVLA
APTGRASKRLQESTGLEAMTIHRLIGWNQETQPEDILDNEINARLIIIDEMSMVDTWLFHQFLSAVPLDAQIVFVGDEDQ
LPSVGPGQVFKDLIDSKRIPRVNLTEVYRQQDGSSIVDLAHRMKVGEPIDITQRFHDRSFINCTSDQIPDVVDKVVKSAV
SKGYNMSDIQVLAPMYKGNAGIKRLNQVLQSILNPKEKDSREIEFGDVVFRKGDKVLQLVNRPNDNIFNGDIGVIVGIFW
AKENALNKDVIVVDFEGNEITFTRQDLLELTHAYCTSIHKSQGSEFPIVIMPIVKQYFRMLQRPILYTGLTRAKQSLVLL
GDPQAFDIGLKTKGQERLTQLNHLLKSYFGDEQEVIGSSGHSSVNSTEKHDTTQTDEENATTDAPQNDIVLSETTIFKID
PMINMGEMTPYDFAEH

Nucleotide

• Length: 2451 bp

>NTDB_id=938206 V6C62_RS06110 WP_367140465.1 1237111..1239561(+) (recD2) [Staphylococcus capitis subsp. urealyticus strain Sc1365666]
ATGTCTGACCCTACACTTTTTGATAAATCAATGATCAAAGGTACTGTAGATGCTATATTATTTCAAAATAATGATAATTT
CTATACAGTTCTTAAAGTAGACACGATTGAAACGAATGAGTCCTTTGATAGCATGCCAACTGTTGTAGGGTTTCTTCCAA
ATGTAGTTGAAGGAGACGTCTATACGTTTAAAGGGCAAATTGTCGACCACCCACGTTATGGTAAACAATTAAAAGCTGAA
ACTTTTGAAAAGGAACTTCCACAAACCAAAGAAGCAATTATTAGTTATTTATCTAGTGATTTATTTAAAGGAATAGGAAA
GAAAACTGCTCAAAATATTGTTAATGCATTAGGCGAGAATGCAATCAATGATATATTAAATAATCCTGAAGTGTTAGAAA
AAGTCCCTAGTTTACCTAAGAAAAAGCAAAAGCAGATTGCAGAACAAATAAGTTCGAATCAAGAATCAGAAAAAATAATG
ATTCGGTTACATGATTTAGGATTTGGTCCTAAACTTTCAATGGCAATTTATCAGTTTTATATGGGAGATACATTGAAAAT
ACTAGACGAAAATCCTTATCAACTCGTTTATGATATTAAAGGAATAGGTTTTAATAAAGCTGATCAATTAGCGCGAAACA
TTGGTATTGCAGCAGATTCTGAAGAGCGTTTGAAAGCAGGATTGCTTTATACACTTGAAGAAGAATGTATCAAACAAGGA
CATACATATTTGCCTAATTCATATGTGATTGAATCAACGCAAACTATGCTTAACGATAGCTCTGAAGTTGTAATTTCTAC
TAAAATGCTAGAGCAAAAGATTGAGCAACTCTCTGAAGAGAAAAAATTGATTCAAAGCGAAGAACAAGTTTCAATTCCAA
GTTTGTATTATTCGGAATTAAAGAGTGTTCAAAATCTTTATCGTATTCAAACTAATAATAAAAAGTTAAAAGAAATCGAA
CAATCAGATTTACAAATGCATATTGGTGAAATTGAGTCACTAAATCAAGTAAATTATGCAACTTCACAGAAAGAAGCTTT
AGAGACGGCAATCAATTCAAAAGTGATGCTTCTTACTGGTGGTCCCGGTACTGGTAAAACTACTGTCATTAAAGGCATCG
TAGAGCTTTATGCAGAAATACATGGATTATCATTAGATTATGATGATTACAACGAGGATGATTATCCAGTTGTACTTGCT
GCACCAACTGGACGCGCATCTAAAAGACTTCAGGAATCTACTGGATTAGAAGCAATGACAATTCACCGTTTAATAGGTTG
GAATCAAGAAACACAACCTGAAGATATTTTAGATAATGAAATTAATGCACGGCTTATCATTATAGATGAAATGTCTATGG
TAGATACATGGTTATTTCATCAATTTTTAAGTGCTGTTCCATTAGATGCTCAAATTGTATTTGTAGGAGATGAAGACCAA
CTCCCTTCAGTTGGACCGGGTCAAGTGTTTAAAGACCTCATTGATTCTAAAAGAATTCCGCGTGTTAATCTTACGGAAGT
GTATCGCCAACAGGATGGCTCAAGTATTGTTGATTTAGCACATCGTATGAAAGTAGGCGAACCCATAGATATAACTCAAC
GTTTTCACGATCGCAGTTTCATTAACTGTACTTCAGACCAAATACCTGATGTAGTAGATAAAGTTGTTAAAAGTGCAGTG
AGTAAAGGGTATAATATGAGTGATATTCAAGTCCTTGCTCCTATGTATAAAGGTAATGCAGGAATAAAACGTCTCAATCA
AGTATTACAATCTATTTTAAATCCAAAGGAAAAAGATAGTCGTGAAATTGAATTCGGAGATGTTGTATTTCGTAAAGGAG
ATAAAGTACTTCAGTTGGTCAATAGACCTAATGACAATATATTTAATGGTGATATTGGTGTAATTGTAGGCATATTTTGG
GCTAAAGAAAATGCTCTTAATAAAGATGTAATAGTAGTAGATTTTGAAGGAAATGAAATTACCTTTACTCGACAAGACTT
ACTTGAACTTACTCATGCTTATTGTACATCTATTCATAAATCTCAAGGGTCAGAATTTCCAATTGTTATTATGCCTATAG
TTAAACAATACTTTCGTATGTTACAAAGACCTATCCTTTATACGGGTCTGACCCGTGCTAAGCAATCACTTGTTTTACTT
GGGGATCCCCAAGCATTTGATATAGGACTGAAGACAAAAGGCCAAGAACGTTTAACTCAGTTGAATCACTTATTAAAATC
TTATTTTGGTGATGAGCAAGAAGTTATAGGTAGTTCAGGTCATTCATCTGTAAATAGCACTGAAAAACATGATACTACAC
AAACTGATGAAGAGAACGCAACAACTGACGCACCACAAAATGACATTGTTCTTAGTGAAACCACTATATTTAAGATTGAT
CCTATGATTAATATGGGAGAAATGACGCCTTACGATTTTGCCGAGCATTGA

Domains

Predicted by InterproScan.

• UvrD-like helicase C-terminal domain (UvrD_C_2) (672-720)

• ATP-dependent RecD-like DNA helicase SH3 domain (SH3_13) (585-655)

• Helix-hairpin-helix containing domain (HHH_RecD2) (153-243)

• AAA domain (AAA_30) (339-545)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
recD2	Bacillus subtilis subsp. subtilis str. 168	49.14	99.755	0.49