Detailed information    

insolico Bioinformatically predicted

Overview

Name   recD2   Type   Machinery gene
Locus tag   V6C75_RS06025 Genome accession   NZ_CP145221
Coordinates   1251537..1253987 (+) Length   816 a.a.
NCBI ID   WP_047796354.1    Uniprot ID   -
Organism   Staphylococcus capitis subsp. urealyticus strain Sc1365706     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1246537..1258987
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  V6C75_RS06000 - 1247052..1247192 (+) 141 WP_002436115.1 SAS049 family protein -
  V6C75_RS06005 - 1247248..1248243 (-) 996 WP_367081274.1 LLM class flavin-dependent oxidoreductase -
  V6C75_RS06010 - 1248504..1249646 (+) 1143 WP_047796357.1 cysteine desulfurase family protein -
  V6C75_RS06015 mnmA 1249646..1250764 (+) 1119 WP_047796356.1 tRNA 2-thiouridine(34) synthase MnmA -
  V6C75_RS06020 - 1250867..1251535 (+) 669 WP_047796355.1 tetratricopeptide repeat protein -
  V6C75_RS06025 recD2 1251537..1253987 (+) 2451 WP_047796354.1 ATP-dependent RecD-like DNA helicase Machinery gene
  V6C75_RS06030 alaS 1254327..1256957 (+) 2631 WP_367080910.1 alanine--tRNA ligase -
  V6C75_RS06035 - 1257021..1257281 (+) 261 WP_002435994.1 IreB family regulatory phosphoprotein -
  V6C75_RS06040 ruvX 1257283..1257711 (+) 429 WP_002435990.1 Holliday junction resolvase RuvX -
  V6C75_RS06045 - 1257725..1258045 (+) 321 WP_002436074.1 DUF1292 domain-containing protein -

Sequence

Protein


Download         Length: 816 a.a.        Molecular weight: 91861.27 Da        Isoelectric Point: 4.6606

>NTDB_id=937898 V6C75_RS06025 WP_047796354.1 1251537..1253987(+) (recD2) [Staphylococcus capitis subsp. urealyticus strain Sc1365706]
MSDPTLFDKSMIKGTVDAILFQNNDNFYTVLKVDTIETNESFDSMPTVVGFLPNVVEGDVYTFKGQIVEHPRYGKQLKAE
TFEKELPQTKDAIISYLSSDLFKGIGKKTAQNIVNALGENAINDILNNPEVLEKVPSLPKKKQKQIAEQISSNQESEKIM
IRLHDLGFGPKLSMAIYQFYMGETLKILDENPYQLVYDIKGIGFNKADQLARNIGIAADSEERLKAGLLYTLEEECIKQG
HTYLPNSYVIESTQTMLNDSSEVVISTKMLEQKIEQLSEEKKLIQSEEQVSIPSLYYSELKSVQNLYRIQANNKKLKEIE
QSDLQMHIGEIESLNQVNYATSQKEALETAINSKVMLLTGGPGTGKTTVIKGIVELYAEIHGLSLDYDDYNEDDYPVVLA
APTGRASKRLQESTGLEAMTIHRLIGWNQETQPEDILDNEINARLIIIDEMSMVDTWLFHQFLSAVPLDAQIVFVGDEDQ
LPSVGPGQVFKDLIDSKRIPRVNLTEVYRQQDGSSIVDLAHRMKVGEPIDITQRFHDRSFINCTSDQIPDVVDKVVKSAV
SKGYNMSDIQVLAPMYKGNAGIKRLNQVLQSILNPKEKDSREIEFGDVVFRKGDKVLQLVNRPNDNIFNGDIGVIVGIFW
AKENALNKDVIVVDFEGNEITFTRQDLLELTHAYCTSIHKSQGSEFPIVIMPIVKQYFRMLQRPILYTGLTRAKQSLVLL
GDPQAFDIGLKTKGQERLTQLNHLLKSYFGDEQEVIGSSGHSSVNSTEKHDTTQTEEENATTDAPHNDIVLSETTIFKID
PMINMGEMTPYDFAEH

Nucleotide


Download         Length: 2451 bp        

>NTDB_id=937898 V6C75_RS06025 WP_047796354.1 1251537..1253987(+) (recD2) [Staphylococcus capitis subsp. urealyticus strain Sc1365706]
ATGTCTGACCCTACACTTTTTGATAAATCAATGATCAAAGGTACTGTAGATGCTATATTATTTCAAAATAATGATAATTT
CTATACAGTTCTTAAAGTAGACACGATTGAAACGAATGAGTCCTTTGATAGCATGCCAACTGTTGTAGGGTTTCTTCCAA
ATGTAGTTGAAGGAGACGTCTATACGTTTAAAGGGCAAATTGTCGAACACCCACGTTATGGTAAACAGTTAAAAGCTGAA
ACTTTTGAAAAGGAACTTCCACAAACCAAAGATGCAATTATTAGTTATTTATCAAGCGATTTATTTAAAGGAATAGGAAA
AAAAACAGCTCAAAATATTGTTAATGCATTAGGCGAGAATGCAATCAATGATATATTAAATAATCCTGAAGTGTTAGAAA
AAGTCCCTAGTTTACCTAAGAAAAAGCAAAAGCAGATTGCAGAACAAATAAGTTCGAATCAAGAATCAGAAAAAATAATG
ATTCGGTTACATGATTTAGGATTTGGTCCTAAACTTTCAATGGCAATTTATCAGTTTTATATGGGAGAAACATTGAAAAT
ACTAGACGAAAATCCTTATCAACTCGTTTATGATATTAAAGGAATAGGTTTTAATAAAGCTGATCAATTAGCGCGAAACA
TTGGTATTGCAGCAGATTCTGAAGAGCGTTTGAAAGCAGGATTGCTTTATACACTTGAAGAAGAATGTATCAAACAAGGG
CATACATATTTGCCTAATTCATATGTGATTGAATCAACGCAAACTATGCTTAACGATAGCTCTGAAGTTGTTATTTCTAC
TAAAATGCTAGAGCAAAAGATTGAGCAACTCTCTGAAGAGAAAAAATTGATTCAAAGCGAAGAACAAGTTTCAATTCCAA
GTTTGTATTATTCGGAATTAAAGAGTGTTCAAAATCTTTATCGTATTCAAGCTAATAATAAAAAGTTAAAAGAAATCGAA
CAATCAGATTTACAAATGCATATTGGTGAAATTGAGTCACTAAATCAAGTAAATTATGCAACTTCACAGAAAGAGGCTTT
AGAGACGGCAATCAATTCAAAAGTCATGCTTCTTACAGGTGGTCCCGGTACTGGTAAAACTACTGTCATTAAAGGCATCG
TAGAGCTTTATGCGGAAATACATGGATTATCATTGGATTATGATGATTACAACGAGGATGATTATCCAGTTGTACTTGCT
GCACCAACTGGACGCGCATCTAAAAGACTTCAGGAATCTACTGGATTAGAAGCAATGACAATTCACCGTTTAATAGGTTG
GAATCAAGAAACACAACCTGAAGATATTTTAGATAATGAAATTAATGCACGGCTTATCATTATAGATGAAATGTCTATGG
TAGATACATGGTTATTTCATCAATTTTTAAGTGCTGTTCCATTAGATGCTCAAATTGTATTTGTAGGAGATGAAGACCAA
CTCCCTTCAGTTGGACCGGGTCAAGTGTTTAAAGACCTCATTGATTCTAAAAGAATTCCGCGTGTTAATCTTACGGAAGT
GTATCGCCAACAAGATGGCTCAAGTATTGTTGATTTAGCACATCGTATGAAAGTAGGCGAACCCATAGATATAACTCAAC
GTTTTCACGATCGCAGTTTCATTAACTGTACTTCAGACCAAATACCTGATGTAGTAGATAAAGTAGTTAAAAGTGCAGTG
AGTAAAGGGTATAATATGAGTGATATTCAAGTCCTTGCTCCTATGTATAAAGGTAATGCAGGAATAAAACGTCTCAATCA
AGTATTACAATCTATTTTAAATCCAAAGGAAAAAGATAGTCGTGAAATTGAATTCGGAGATGTTGTATTTCGTAAAGGAG
ATAAAGTACTTCAGTTGGTCAATAGACCTAATGACAATATATTTAATGGTGATATTGGTGTAATTGTAGGCATATTTTGG
GCTAAAGAAAATGCTCTTAATAAAGATGTAATAGTAGTAGATTTTGAAGGAAATGAAATTACCTTTACTCGACAAGATTT
ACTTGAACTTACTCATGCTTATTGTACATCTATTCATAAATCTCAAGGGTCAGAATTTCCAATTGTTATTATGCCTATAG
TTAAACAATACTTTCGTATGTTACAAAGACCTATCCTTTATACGGGTCTGACCCGTGCTAAGCAATCACTTGTTTTACTT
GGGGATCCCCAAGCATTTGATATAGGACTGAAGACAAAAGGCCAAGAACGTTTAACTCAGTTGAATCACTTATTAAAATC
TTATTTTGGTGATGAGCAAGAAGTTATAGGTAGTTCAGGTCATTCATCTGTAAATAGCACTGAAAAACATGATACTACAC
AAACTGAAGAAGAGAACGCAACAACTGACGCACCACATAATGACATTGTTCTTAGTGAAACCACTATATTTAAAATTGAT
CCTATGATTAATATGGGAGAAATGACGCCTTACGATTTTGCCGAGCATTGA

Domains

Predicted by InterproScan.

UvrD-like helicase C-terminal domain (UvrD_C_2)

(672-720)

AAA domain (AAA_30)

(339-545)

ATP-dependent RecD-like DNA helicase SH3 domain (SH3_13)

(585-655)

Helix-hairpin-helix containing domain (HHH_RecD2)

(153-243)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recD2 Bacillus subtilis subsp. subtilis str. 168

49.14

99.755

0.49