Detailed information    

insolico Bioinformatically predicted

Overview

Name   comYH   Type   Machinery gene
Locus tag   LLID5_RS10540 Genome accession   NZ_AP025701
Coordinates   2195385..2196323 (-) Length   312 a.a.
NCBI ID   WP_251918718.1    Uniprot ID   -
Organism   Lactococcus lactis strain ID-5     
Function   dsDNA binding to the cell surface; assembly of the pseudopilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2190385..2201323
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LLID5_RS10515 (LLID5_20680) frr 2190503..2191060 (-) 558 WP_004254618.1 ribosome recycling factor -
  LLID5_RS10520 (LLID5_20690) pyrH 2191272..2191988 (-) 717 WP_021464089.1 UMP kinase -
  LLID5_RS10525 (LLID5_20700) - 2192073..2192525 (-) 453 WP_021464090.1 hypothetical protein -
  LLID5_RS10530 (LLID5_20710) - 2192659..2193846 (-) 1188 WP_058204389.1 acetate kinase -
  LLID5_RS10535 (LLID5_20730) - 2194003..2195190 (-) 1188 WP_023188635.1 acetate kinase -
  LLID5_RS10540 (LLID5_20740) comYH 2195385..2196323 (-) 939 WP_251918718.1 class I SAM-dependent methyltransferase Machinery gene
  LLID5_RS10545 (LLID5_20750) - 2196411..2196662 (-) 252 WP_004254583.1 DUF3165 family protein -
  LLID5_RS10550 (LLID5_20760) typA 2196763..2198595 (-) 1833 WP_025016832.1 translational GTPase TypA -
  LLID5_RS12160 - 2198783..2199240 (-) 458 Protein_2059 hypothetical protein -
  LLID5_RS10560 (LLID5_20780) - 2199397..2200023 (-) 627 WP_251918720.1 ABC transporter ATP-binding protein -

Sequence

Protein


Download         Length: 312 a.a.        Molecular weight: 34770.89 Da        Isoelectric Point: 4.3717

>NTDB_id=93753 LLID5_RS10540 WP_251918718.1 2195385..2196323(-) (comYH) [Lactococcus lactis strain ID-5]
MDMEKVAQGFELVVANIMLLSEKLDTDFYDAFVEQNAAFLDDTDQGIVELSVNNDKLRQLNLSNKEWQKLFQFVLLKGSQ
VAPLQPNHAMTPDAIGLIFNFIIEHLNKNSELRLIEFGSGMGNLAETLLVNLNKKVDYVGFEVDDLLLDLSASMAEIMGS
QAEFMQIDAVQKRLMEPADVVVSDLPIGFYPDDEVAKNFEAATTDGHTFAHHLLIEQSFNYLKEGSFAIFLAPEDLLTSP
QGPLLKEWISKHGSVMAVITLPKSLFNADAKAIYVLKKGPAAHATFAHPLSSLTDRESLEVFMEEFTKIVKL

Nucleotide


Download         Length: 939 bp        

>NTDB_id=93753 LLID5_RS10540 WP_251918718.1 2195385..2196323(-) (comYH) [Lactococcus lactis strain ID-5]
ATGGATATGGAAAAAGTGGCTCAAGGTTTTGAGCTAGTTGTTGCAAATATTATGTTACTATCTGAGAAATTGGATACAGA
TTTTTATGATGCTTTTGTAGAACAAAATGCTGCTTTTTTAGATGATACTGACCAAGGAATTGTTGAATTGTCAGTAAATA
ATGACAAACTTCGTCAGTTAAATTTATCAAATAAGGAGTGGCAAAAACTTTTTCAATTTGTTTTGTTGAAAGGGTCACAA
GTCGCACCACTTCAGCCCAATCATGCAATGACTCCAGATGCAATTGGTTTAATTTTTAATTTCATTATTGAACATCTTAA
TAAAAATTCTGAACTTCGTTTAATTGAATTTGGGTCTGGCATGGGTAATCTTGCTGAAACGCTTTTAGTTAATCTTAATA
AAAAGGTTGATTATGTAGGCTTTGAAGTTGATGATTTACTTTTAGATTTGTCTGCTTCAATGGCTGAAATTATGGGGAGT
CAGGCTGAGTTCATGCAAATTGATGCAGTACAAAAGCGTTTGATGGAACCTGCAGACGTTGTTGTCAGTGATTTACCAAT
TGGTTTTTATCCAGATGATGAAGTTGCAAAGAATTTTGAAGCTGCGACTACTGACGGACATACTTTTGCTCATCATCTTT
TGATTGAGCAATCATTTAATTATTTAAAAGAGGGTTCTTTTGCCATTTTCCTAGCTCCAGAAGATTTACTGACAAGTCCT
CAAGGACCACTATTAAAGGAGTGGATTAGTAAACATGGAAGTGTGATGGCTGTCATCACTTTACCAAAATCACTTTTTAA
TGCTGATGCTAAGGCGATTTATGTTTTGAAAAAGGGGCCGGCTGCACATGCAACTTTTGCTCACCCTTTGTCTTCACTGA
CAGACAGAGAAAGTTTAGAAGTCTTTATGGAAGAATTTACAAAAATTGTAAAATTATAA

Domains


No domain identified.



Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comYH Streptococcus mutans UA140

48.562

100

0.487
  comYH Streptococcus mutans UA159

48.243

100

0.484

Multiple sequence alignment