Detailed information    

insolico Bioinformatically predicted

Overview

Name   codY   Type   Regulator
Locus tag   V5F86_RS08655 Genome accession   NZ_CP145137
Coordinates   1693087..1693866 (+) Length   259 a.a.
NCBI ID   WP_003220850.1    Uniprot ID   G4NSM6
Organism   Bacillus spizizenii strain kcgeb_sc     
Function   repression of comK (predicted from homology)   
Competence regulation

Genomic Context

Location: 1688087..1698866
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  V5F86_RS08635 (V5F86_08640) trmFO 1688780..1690087 (+) 1308 WP_338444342.1 FADH(2)-oxidizing methylenetetrahydrofolate--tRNA-(uracil(54)-C(5))- methyltransferase TrmFO -
  V5F86_RS08640 (V5F86_08645) xerC 1690155..1691069 (+) 915 WP_014113784.1 tyrosine recombinase XerC -
  V5F86_RS08645 (V5F86_08650) clpQ 1691082..1691627 (+) 546 WP_003238555.1 ATP-dependent protease subunit ClpQ -
  V5F86_RS08650 (V5F86_08655) hslU 1691635..1693047 (+) 1413 WP_268393776.1 HslU--HslV peptidase ATPase subunit -
  V5F86_RS08655 (V5F86_08660) codY 1693087..1693866 (+) 780 WP_003220850.1 GTP-sensing pleiotropic transcriptional regulator CodY Regulator
  V5F86_RS08660 (V5F86_08665) flgB 1694249..1694638 (+) 390 WP_338444343.1 flagellar basal body rod protein FlgB -
  V5F86_RS08665 (V5F86_08670) flgC 1694638..1695090 (+) 453 WP_014113787.1 flagellar basal body rod protein FlgC -
  V5F86_RS08670 (V5F86_08675) fliE 1695102..1695422 (+) 321 WP_003238544.1 flagellar hook-basal body complex protein FliE -
  V5F86_RS08675 (V5F86_08680) fliF 1695468..1697078 (+) 1611 WP_338444344.1 flagellar basal-body MS-ring/collar protein FliF -
  V5F86_RS08680 (V5F86_08685) fliG 1697091..1698107 (+) 1017 WP_003220860.1 flagellar motor switch protein FliG -
  V5F86_RS08685 (V5F86_08690) fliH 1698100..1698852 (+) 753 WP_338444345.1 flagellar assembly protein FliH -

Sequence

Protein


Download         Length: 259 a.a.        Molecular weight: 29013.22 Da        Isoelectric Point: 4.6514

>NTDB_id=937411 V5F86_RS08655 WP_003220850.1 1693087..1693866(+) (codY) [Bacillus spizizenii strain kcgeb_sc]
MALLQKTRIINSMLQAAAGKPVNFKEMAETLRDVIDSNIFVVSRRGKLLGYSINQQIENDRMKKMLEDRQFPEEYTKNLF
NVPETSSNLDINSEYTAFPVENRDLFQAGLTTIVPIIGGGERLGTLILSRLQDQFNDDDLILAEYGATVVGMEILREKAE
EIEEEARSKAVVQMAISSLSYSELEAIEHIFEELDGNEGLLVASKIADRVGITRSVIVNALRKLESAGVIESRSLGMKGT
YIKVLNNKFLIELENLKSH

Nucleotide


Download         Length: 780 bp        

>NTDB_id=937411 V5F86_RS08655 WP_003220850.1 1693087..1693866(+) (codY) [Bacillus spizizenii strain kcgeb_sc]
ATGGCTTTATTACAAAAAACACGAATTATTAACTCCATGCTGCAAGCTGCGGCAGGGAAACCGGTAAACTTCAAGGAAAT
GGCGGAGACGCTGCGGGATGTAATTGATTCCAATATTTTTGTTGTAAGCCGCAGAGGCAAGCTCCTTGGATATTCTATTA
ACCAGCAAATTGAAAATGATCGTATGAAAAAAATGCTTGAGGATCGTCAATTCCCTGAAGAATATACGAAAAATCTGTTT
AATGTCCCTGAAACATCTTCTAACTTGGACATTAATAGTGAATATACTGCTTTTCCTGTTGAAAACAGAGACCTGTTCCA
AGCTGGTTTAACAACAATTGTACCAATCATCGGAGGCGGAGAAAGATTAGGAACACTCATTCTTTCACGTTTACAGGATC
AATTTAATGACGATGACTTAATTCTCGCTGAATACGGCGCTACAGTTGTCGGTATGGAGATCCTGAGAGAAAAAGCAGAA
GAAATCGAAGAGGAAGCAAGAAGCAAAGCTGTCGTTCAAATGGCTATCAGTTCTCTTTCTTACAGTGAGCTTGAAGCAAT
TGAGCACATTTTTGAAGAGCTTGATGGAAACGAAGGTCTCCTCGTTGCAAGTAAAATCGCTGACCGCGTCGGCATTACCC
GTTCTGTTATTGTGAACGCACTCAGAAAGCTGGAAAGCGCGGGTGTTATCGAGTCAAGATCATTAGGAATGAAAGGTACT
TATATCAAAGTCCTAAACAATAAATTCCTAATCGAATTAGAAAATCTAAAATCTCATTAA

Domains

Predicted by InterproScan.

CodY helix-turn-helix domain (HTH_CodY)

(198-255)

CodY GAF-like domain (CodY)

(3-178)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB G4NSM6

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  codY Bacillus subtilis subsp. subtilis str. 168

100

100

1
  codY Lactococcus lactis subsp. lactis strain DGCC12653

47.451

98.456

0.467