Detailed information    

insolico Bioinformatically predicted

Overview

Name   codY   Type   Regulator
Locus tag   D712_RS06295 Genome accession   NZ_CP168754
Coordinates   1283996..1284769 (+) Length   257 a.a.
NCBI ID   WP_130163212.1    Uniprot ID   -
Organism   Staphylococcus aureus strain D712     
Function   repression of comK (predicted from homology)   
Competence regulation

Genomic Context

Location: 1278996..1289769
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  D712_RS06275 (D712_006275) trmFO 1279339..1280646 (+) 1308 WP_000195254.1 methylenetetrahydrofolate--tRNA-(uracil(54)- C(5))-methyltransferase (FADH(2)-oxidizing) TrmFO -
  D712_RS06280 (D712_006280) xerC 1281064..1281960 (+) 897 WP_001015601.1 tyrosine recombinase XerC -
  D712_RS06285 (D712_006285) hslV 1281957..1282502 (+) 546 WP_000072681.1 ATP-dependent protease subunit HslV -
  D712_RS06290 (D712_006290) hslU 1282568..1283971 (+) 1404 WP_000379054.1 ATP-dependent protease ATPase subunit HslU -
  D712_RS06295 (D712_006295) codY 1283996..1284769 (+) 774 WP_130163212.1 GTP-sensing pleiotropic transcriptional regulator CodY Regulator
  D712_RS06300 (D712_006300) - 1284843..1284917 (+) 75 WP_031761472.1 hypothetical protein -
  D712_RS06305 (D712_006305) rpsB 1285116..1285883 (+) 768 WP_000268486.1 30S ribosomal protein S2 -
  D712_RS06310 (D712_006310) - 1285917..1286030 (+) 114 WP_001789890.1 hypothetical protein -
  D712_RS06315 (D712_006315) tsf 1286065..1286946 (+) 882 WP_000201392.1 translation elongation factor Ts -
  D712_RS06320 (D712_006320) pyrH 1287083..1287805 (+) 723 WP_000057330.1 UMP kinase -
  D712_RS06325 (D712_006325) frr 1287824..1288378 (+) 555 WP_001280006.1 ribosome recycling factor -
  D712_RS06330 (D712_006330) - 1288751..1289521 (+) 771 WP_000473699.1 isoprenyl transferase -

Sequence

Protein


Download         Length: 257 a.a.        Molecular weight: 28721.11 Da        Isoelectric Point: 6.0680

>NTDB_id=937028 D712_RS06295 WP_130163212.1 1283996..1284769(+) (codY) [Staphylococcus aureus strain D712]
MSLLSKTRELNTLLQKHKGIAVDFKDVAQTISSVTVTNVFIVSRRGKILGSSLNELLKSQRIIQMLEERHIPSEYTERLM
EVKQTESNIDIDNVLTVFPPENRELFIDSRTTIFPILGGGERLGTLVLGRVHDDLNENDLVLGEYAATVIGMEILREKHS
EVEKEARDKAAITMAINSLSYSEKEAIEHIFEELGGTEGLLIASKVADRVGITRSVIVNALRKLESAGVIESRSLGMKGT
FIKVKKEKFLDELEKSK

Nucleotide


Download         Length: 774 bp        

>NTDB_id=937028 D712_RS06295 WP_130163212.1 1283996..1284769(+) (codY) [Staphylococcus aureus strain D712]
ATGAGCTTATTATCTAAAACGAGAGAGTTAAACACGTTACTTCAAAAACACAAAGGTATTGCGGTTGATTTTAAAGATGT
AGCACAAACGATTAGTAGCGTAACTGTAACAAATGTATTTATTGTATCGCGTCGAGGTAAAATTTTAGGGTCGAGTCTAA
ATGAATTATTAAAAAGTCAAAGAATTATTCAAATGTTGGAAGAAAGACATATTCCAAGTGAATATACAGAACGATTAATG
GAAGTTAAACAAACAGAATCAAATATTGATATCGACAATGTATTAACAGTATTCCCACCTGAAAACAGAGAATTATTCAT
AGATAGTCGTACAACTATCTTCCCAATTTTAGGTGGAGGAGAAAGATTAGGTACATTAGTACTTGGTCGAGTACATGATG
ATTTAAATGAAAATGATTTGGTACTAGGTGAATATGCTGCTACAGTTATTGGTATGGAAATCTTACGTGAGAAGCATAGT
GAAGTAGAAAAAGAAGCGCGCGATAAAGCTGCTATTACAATGGCAATTAATTCATTATCTTATTCTGAAAAAGAAGCGAT
TGAACATATCTTTGAAGAACTTGGCGGTACGGAAGGCCTATTAATCGCATCAAAAGTTGCAGATAGAGTTGGTATTACTA
GATCTGTAATTGTAAATGCACTACGTAAATTAGAAAGTGCTGGTGTAATTGAATCACGTTCTTTAGGAATGAAAGGTACT
TTCATTAAAGTTAAAAAAGAAAAATTCTTAGATGAATTAGAAAAAAGTAAATAA

Domains

Predicted by InterProScan.

CodY GAF-like domain (CodY)

(2-178)

CodY helix-turn-helix domain (HTH_CodY)

(198-255)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  codY Bacillus subtilis subsp. subtilis str. 168

63.813

100

0.638
  codY Lactococcus lactis subsp. lactis strain DGCC12653

42.412

100

0.424