Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilP   Type   Machinery gene
Locus tag   V5F92_RS00480 Genome accession   NZ_CP145050
Coordinates   104885..105430 (-) Length   181 a.a.
NCBI ID   WP_047917631.1    Uniprot ID   A0AA44U8U6
Organism   Neisseria gonorrhoeae strain WHO_H_2024     
Function   pseudopilus extrusion and retraction (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 99885..110430
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  V5F92_RS00470 (V5F92_00475) - 100891..101403 (-) 513 WP_003687349.1 shikimate kinase -
  V5F92_RS00475 (V5F92_00480) pilQ 102671..104866 (-) 2196 WP_003687350.1 type IV pilus secretin PilQ Machinery gene
  V5F92_RS00480 (V5F92_00485) pilP 104885..105430 (-) 546 WP_047917631.1 pilus assembly protein PilP Machinery gene
  V5F92_RS00485 (V5F92_00490) - 105448..106095 (-) 648 WP_003690570.1 type 4a pilus biogenesis protein PilO -
  V5F92_RS00490 (V5F92_00495) pilN 106096..106695 (-) 600 WP_003687354.1 PilN domain-containing protein Machinery gene
  V5F92_RS00495 (V5F92_00500) pilM 106698..107813 (-) 1116 WP_003687356.1 type IV pilus biogenesis protein PilM -
  V5F92_RS00500 (V5F92_00505) - 107965..110361 (+) 2397 WP_003690571.1 penicillin-binding protein 1A -

Sequence

Protein


Download         Length: 181 a.a.        Molecular weight: 20097.62 Da        Isoelectric Point: 4.7529

>NTDB_id=936439 V5F92_RS00480 WP_047917631.1 104885..105430(-) (pilP) [Neisseria gonorrhoeae strain WHO_H_2024]
MKHYALLISFLALSACSQSSEDLNEWMAQTRREAKAEIIPFQAPTLPVAPVYSPPQLTGPNAFDFRRMETAKKGENAPDT
KRIKETLEKFSLENMRYVGILKSGQKVSGFIEAEGYVYTVGVGNYLGQNYGRIESITDDSIILNELIEDSTGNWVSRKAE
LLLNSSDKNTEQAAAPATEQN

Nucleotide


Download         Length: 546 bp        

>NTDB_id=936439 V5F92_RS00480 WP_047917631.1 104885..105430(-) (pilP) [Neisseria gonorrhoeae strain WHO_H_2024]
ATGAAACACTATGCCTTACTCATCAGCTTTCTGGCTCTCTCCGCGTGTTCCCAAAGTTCTGAAGACCTAAACGAATGGAT
GGCACAAACGCGACGCGAAGCCAAAGCAGAAATCATACCTTTCCAAGCACCTACCCTGCCGGTTGCGCCGGTATACAGCC
CGCCGCAGCTTACAGGGCCGAACGCATTCGACTTCCGCCGCATGGAAACCGCCAAAAAAGGGGAAAATGCCCCCGACACC
AAGCGTATTAAAGAAACGCTGGAAAAATTCAGTTTGGAAAATATGCGTTATGTCGGCATTTTGAAGTCCGGACAGAAAGT
CTCCGGCTTCATCGAGGCTGAAGGTTATGTCTACACTGTCGGTGTCGGCAACTATTTGGGACAAAACTACGGTAGAATCG
AAAGCATTACCGACGACAGCATCATCCTGAACGAGCTGATAGAAGACAGCACGGGCAACTGGGTTTCCCGTAAAGCAGAA
CTGCTGTTGAATTCTTCCGACAAAAACACCGAACAAGCGGCAGCACCTGCCACAGAACAAAATTAA

Domains

Predicted by InterproScan.

Pilus assembly protein, PilP (PilP)

(22-163)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilP Neisseria meningitidis MC58

97.79

100

0.978