Detailed information
Bioinformatically predicted
Overview
| Name | pilJ | Type | Machinery gene |
| Locus tag | V5G06_RS02690 | Genome accession | NZ_CP145048 |
| Coordinates | 518549..519490 (+) | Length | 313 a.a. |
| NCBI ID | WP_003690899.1 | Uniprot ID | - |
| Organism | Neisseria gonorrhoeae strain WHO_K_2024 | ||
| Function | type IV pilus (predicted from homology) DNA binding and uptake |
||
Related MGE
Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.
Gene-MGE association summary
| MGE type | MGE coordinates | Gene coordinates | Relative position | Distance (bp) |
|---|---|---|---|---|
| Prophage | 515533..572126 | 518549..519490 | within | 0 |
Gene organization within MGE regions
Location: 515533..572126
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| V5G06_RS02675 (V5G06_02680) | dnaB | 515533..516939 (+) | 1407 | WP_003690896.1 | replicative DNA helicase | - |
| V5G06_RS02680 (V5G06_02685) | pilH | 517247..517912 (+) | 666 | WP_003690897.1 | Tfp pilus assembly protein FimT/FimU | Machinery gene |
| V5G06_RS02685 (V5G06_02690) | pilI | 517944..518552 (+) | 609 | WP_003690898.1 | type IV pilus modification protein PilV | Machinery gene |
| V5G06_RS02690 (V5G06_02695) | pilJ | 518549..519490 (+) | 942 | WP_003690899.1 | PilW family protein | Machinery gene |
| V5G06_RS02695 (V5G06_02700) | pilK | 519469..520077 (+) | 609 | WP_003690900.1 | PilX N-terminal domain-containing pilus assembly protein | Machinery gene |
| V5G06_RS02700 (V5G06_02705) | pilL | 520079..520552 (+) | 474 | WP_025455782.1 | PilX family type IV pilin | Machinery gene |
| V5G06_RS02705 (V5G06_02710) | - | 521164..521609 (-) | 446 | Protein_522 | AzlC family ABC transporter permease | - |
| V5G06_RS02710 (V5G06_02715) | dut | 521775..522227 (+) | 453 | WP_003690909.1 | dUTP diphosphatase | - |
| V5G06_RS02715 (V5G06_02720) | dapC | 522305..523492 (+) | 1188 | WP_003690911.1 | succinyldiaminopimelate transaminase | - |
| V5G06_RS02720 (V5G06_02725) | yaaA | 523648..524427 (+) | 780 | WP_003690913.1 | peroxide stress protein YaaA | - |
| V5G06_RS02735 (V5G06_02740) | - | 524958..526154 (+) | 1197 | WP_003704323.1 | integrase arm-type DNA-binding domain-containing protein | - |
| V5G06_RS02740 (V5G06_02745) | - | 526510..526779 (-) | 270 | WP_003687928.1 | hypothetical protein | - |
| V5G06_RS02745 (V5G06_02750) | - | 526974..527657 (-) | 684 | WP_003687929.1 | DUF2786 domain-containing protein | - |
| V5G06_RS02750 (V5G06_02755) | - | 527971..528204 (-) | 234 | Protein_529 | hypothetical protein | - |
| V5G06_RS02755 (V5G06_02760) | - | 528315..528530 (-) | 216 | WP_003691538.1 | hypothetical protein | - |
| V5G06_RS02760 (V5G06_02765) | - | 528582..529073 (-) | 492 | WP_003691537.1 | siphovirus Gp157 family protein | - |
| V5G06_RS02765 (V5G06_02770) | - | 529070..529252 (-) | 183 | WP_003691535.1 | hypothetical protein | - |
| V5G06_RS02770 (V5G06_02775) | - | 529392..530078 (-) | 687 | WP_003691532.1 | phage replication initiation protein, NGO0469 family | - |
| V5G06_RS02775 (V5G06_02780) | - | 530147..530308 (-) | 162 | WP_003691530.1 | hypothetical protein | - |
| V5G06_RS02780 (V5G06_02785) | - | 530305..530583 (-) | 279 | WP_003691529.1 | NGO1622 family putative holin | - |
| V5G06_RS02785 (V5G06_02790) | - | 530736..531068 (-) | 333 | WP_003691528.1 | hypothetical protein | - |
| V5G06_RS02790 (V5G06_02795) | - | 531209..531484 (-) | 276 | WP_003691527.1 | hypothetical protein | - |
| V5G06_RS02795 (V5G06_02800) | - | 531481..531957 (-) | 477 | WP_003691526.1 | hypothetical protein | - |
| V5G06_RS02800 (V5G06_02805) | - | 531990..532190 (-) | 201 | WP_050156312.1 | hypothetical protein | - |
| V5G06_RS02805 (V5G06_02810) | - | 532673..532891 (+) | 219 | WP_003691731.1 | hypothetical protein | - |
| V5G06_RS02810 (V5G06_02815) | - | 532908..533267 (-) | 360 | WP_003691733.1 | hypothetical protein | - |
| V5G06_RS02815 (V5G06_02820) | - | 533268..533807 (-) | 540 | WP_003695998.1 | Panacea domain-containing protein | - |
| V5G06_RS02820 (V5G06_02825) | - | 533967..534683 (-) | 717 | WP_003695999.1 | helix-turn-helix transcriptional regulator | - |
| V5G06_RS02825 (V5G06_02830) | - | 535064..535291 (+) | 228 | WP_003698261.1 | helix-turn-helix domain-containing protein | - |
| V5G06_RS02830 (V5G06_02835) | - | 535409..536473 (+) | 1065 | WP_050154181.1 | hypothetical protein | - |
| V5G06_RS02835 (V5G06_02840) | - | 536470..537831 (+) | 1362 | WP_003689132.1 | DnaB-like helicase C-terminal domain-containing protein | - |
| V5G06_RS02840 (V5G06_02845) | - | 537848..538099 (+) | 252 | WP_003703849.1 | hypothetical protein | - |
| V5G06_RS02845 (V5G06_02850) | - | 538113..538607 (+) | 495 | WP_115067539.1 | DUF3310 domain-containing protein | - |
| V5G06_RS02850 (V5G06_02855) | - | 538990..539139 (+) | 150 | WP_003689110.1 | hypothetical protein | - |
| V5G06_RS02855 (V5G06_02860) | - | 539168..539449 (+) | 282 | WP_003689109.1 | hypothetical protein | - |
| V5G06_RS02860 (V5G06_02865) | - | 539440..539820 (+) | 381 | WP_017147222.1 | RusA family crossover junction endodeoxyribonuclease | - |
| V5G06_RS02865 (V5G06_02870) | - | 540087..540494 (+) | 408 | WP_003691430.1 | hypothetical protein | - |
| V5G06_RS02870 (V5G06_02875) | - | 540585..541745 (+) | 1161 | WP_003691428.1 | type I restriction endonuclease | - |
| V5G06_RS02875 (V5G06_02880) | - | 542038..542865 (+) | 828 | WP_050157519.1 | KilA-N domain-containing protein | - |
| V5G06_RS02880 (V5G06_02885) | - | 543158..543607 (+) | 450 | WP_003695485.1 | hypothetical protein | - |
| V5G06_RS02885 (V5G06_02890) | terL | 543669..545090 (+) | 1422 | WP_003697216.1 | phage terminase large subunit | - |
| V5G06_RS02890 (V5G06_02895) | - | 545087..547234 (+) | 2148 | WP_003691423.1 | phage portal protein | - |
| V5G06_RS02895 (V5G06_02900) | - | 547302..548459 (+) | 1158 | WP_010360058.1 | HK97 family phage prohead protease | - |
| V5G06_RS02900 (V5G06_02905) | - | 548500..549999 (+) | 1500 | WP_003689084.1 | hypothetical protein | - |
| V5G06_RS02905 (V5G06_02910) | - | 550006..550368 (+) | 363 | WP_003689082.1 | hypothetical protein | - |
| V5G06_RS02910 (V5G06_02915) | - | 550371..550901 (+) | 531 | WP_003689080.1 | head-tail connector protein | - |
| V5G06_RS02915 (V5G06_02920) | - | 550901..551383 (+) | 483 | WP_010360061.1 | HK97 gp10 family phage protein | - |
| V5G06_RS02920 (V5G06_02925) | - | 551380..551808 (+) | 429 | WP_003689076.1 | hypothetical protein | - |
| V5G06_RS02925 (V5G06_02930) | - | 551834..552607 (+) | 774 | WP_003692869.1 | hypothetical protein | - |
| V5G06_RS02930 (V5G06_02935) | - | 552668..552997 (+) | 330 | WP_003689072.1 | hypothetical protein | - |
| V5G06_RS02935 (V5G06_02940) | - | 553009..553275 (+) | 267 | WP_003689070.1 | hypothetical protein | - |
| V5G06_RS02940 (V5G06_02945) | - | 553275..553874 (+) | 600 | WP_003691415.1 | DUF2460 domain-containing protein | - |
| V5G06_RS02945 (V5G06_02950) | - | 553871..554725 (+) | 855 | WP_003698614.1 | DUF2163 domain-containing protein | - |
| V5G06_RS02950 (V5G06_02955) | - | 554727..555158 (+) | 432 | WP_003689064.1 | NlpC/P60 family protein | - |
| V5G06_RS02955 (V5G06_02960) | - | 555186..555464 (-) | 279 | WP_003689062.1 | helix-turn-helix domain-containing protein | - |
| V5G06_RS02960 (V5G06_02965) | - | 555704..559849 (+) | 4146 | WP_047926655.1 | phage tail protein | - |
| V5G06_RS02965 (V5G06_02970) | - | 559961..560266 (+) | 306 | WP_003689058.1 | hypothetical protein | - |
| V5G06_RS02970 (V5G06_02975) | - | 560337..560807 (+) | 471 | WP_003691410.1 | hypothetical protein | - |
| V5G06_RS02975 (V5G06_02980) | - | 560808..561140 (+) | 333 | WP_003691408.1 | hypothetical protein | - |
| V5G06_RS02980 (V5G06_02985) | - | 561508..561855 (-) | 348 | WP_003689051.1 | type II toxin-antitoxin system PemK/MazF family toxin | - |
| V5G06_RS02985 (V5G06_02990) | - | 561855..562091 (-) | 237 | WP_003689049.1 | AbrB/MazE/SpoVT family DNA-binding domain-containing protein | - |
| V5G06_RS02990 (V5G06_02995) | - | 562131..562256 (+) | 126 | WP_255294325.1 | hypothetical protein | - |
| V5G06_RS02995 (V5G06_03000) | - | 562298..562837 (+) | 540 | WP_050163081.1 | TIGR02594 family protein | - |
| V5G06_RS03000 (V5G06_03005) | - | 562838..563182 (+) | 345 | WP_003695464.1 | hypothetical protein | - |
| V5G06_RS03005 (V5G06_03010) | - | 563651..563800 (+) | 150 | WP_003691402.1 | hypothetical protein | - |
| V5G06_RS03010 (V5G06_03015) | - | 563830..566877 (+) | 3048 | WP_048653198.1 | tape measure protein | - |
| V5G06_RS03015 (V5G06_03020) | - | 566937..567416 (-) | 480 | WP_002241413.1 | DUF4760 domain-containing protein | - |
| V5G06_RS03020 (V5G06_03025) | - | 567758..568747 (-) | 990 | WP_003689040.1 | site-specific integrase | - |
| V5G06_RS03025 (V5G06_03030) | - | 569007..569195 (-) | 189 | WP_003689039.1 | hypothetical protein | - |
| V5G06_RS03030 (V5G06_03035) | purM | 569436..570470 (+) | 1035 | WP_003691398.1 | phosphoribosylformylglycinamidine cyclo-ligase | - |
| V5G06_RS03035 (V5G06_03040) | - | 571473..572126 (+) | 654 | WP_017147274.1 | IS1595 family transposase | - |
Sequence
Protein
Download Length: 313 a.a. Molecular weight: 34444.17 Da Isoelectric Point: 8.9718
>NTDB_id=936404 V5G06_RS02690 WP_003690899.1 518549..519490(+) (pilJ) [Neisseria gonorrhoeae strain WHO_K_2024]
MKRKMLNVPKGGYDGMKGFTIVEFLVAGLLSVIVLIAVVSSYFTSRKLNDAANERLAIQQDLRNAATLIVRDARMAGSFG
CFNMSEHTEKDVFFGVTQKKPLFSLNLKRNSTNKLIPIAESPNIGYQGFTQRLNALIFQYGIDDANASAETTVVSSCGAI
SKPGKQIPTLEDAKKELKIQDSDKEQNGNIARQRHVVNAYAVGRFGNNEEGLFRFQLDDKGEWGNPQLLAKKVKRMDVRY
IYVSGCPEDEDAGKEEQFKYTGKFDSSVTPAGVEVLLDSGSDAKIAASSDNIIYAYRINATIRGGNVCANRTL
MKRKMLNVPKGGYDGMKGFTIVEFLVAGLLSVIVLIAVVSSYFTSRKLNDAANERLAIQQDLRNAATLIVRDARMAGSFG
CFNMSEHTEKDVFFGVTQKKPLFSLNLKRNSTNKLIPIAESPNIGYQGFTQRLNALIFQYGIDDANASAETTVVSSCGAI
SKPGKQIPTLEDAKKELKIQDSDKEQNGNIARQRHVVNAYAVGRFGNNEEGLFRFQLDDKGEWGNPQLLAKKVKRMDVRY
IYVSGCPEDEDAGKEEQFKYTGKFDSSVTPAGVEVLLDSGSDAKIAASSDNIIYAYRINATIRGGNVCANRTL
Nucleotide
Download Length: 942 bp
>NTDB_id=936404 V5G06_RS02690 WP_003690899.1 518549..519490(+) (pilJ) [Neisseria gonorrhoeae strain WHO_K_2024]
ATGAAACGTAAAATGCTAAACGTACCAAAAGGCGGTTATGATGGTATGAAGGGTTTTACCATTGTTGAATTTCTGGTTGC
GGGCCTGCTCAGTGTGATTGTCCTGATAGCGGTCGTATCGAGTTACTTTACATCCCGGAAATTAAATGATGCGGCAAACG
AGCGTCTTGCCATTCAACAGGATTTGCGGAATGCGGCAACATTGATTGTCCGCGATGCAAGAATGGCGGGGAGCTTCGGT
TGTTTCAATATGTCTGAGCATACCGAAAAGGATGTTTTTTTCGGTGTGACGCAAAAAAAACCTCTTTTTTCCTTAAACTT
AAAAAGGAACAGTACAAATAAACTTATCCCCATAGCGGAATCTCCAAATATCGGATATCAGGGTTTTACCCAGCGCCTTA
ACGCATTGATTTTCCAATACGGAATCGATGATGCTAATGCAAGCGCCGAGACTACCGTCGTCAGCAGCTGTGGCGCAATA
TCGAAACCGGGTAAGCAAATCCCTACTTTAGAAGATGCAAAAAAAGAATTGAAGATTCAGGATTCTGATAAGGAGCAAAA
TGGCAATATAGCGCGTCAAAGGCATGTGGTCAATGCCTATGCGGTCGGCAGGTTTGGCAATAATGAGGAAGGTTTGTTCC
GCTTCCAATTGGATGATAAGGGCGAGTGGGGTAATCCTCAGTTGCTCGCGAAAAAGGTTAAACGTATGGATGTGCGGTAT
ATCTATGTTTCCGGTTGTCCTGAAGATGAAGATGCCGGCAAAGAGGAACAATTCAAATATACGGGTAAATTCGACAGCTC
TGTTACGCCTGCCGGGGTGGAGGTTTTATTGGATAGCGGTAGTGATGCCAAGATTGCCGCTTCTTCAGATAATATTATTT
ATGCTTACCGTATCAATGCGACAATACGCGGGGGAAATGTATGCGCAAACAGAACGCTTTGA
ATGAAACGTAAAATGCTAAACGTACCAAAAGGCGGTTATGATGGTATGAAGGGTTTTACCATTGTTGAATTTCTGGTTGC
GGGCCTGCTCAGTGTGATTGTCCTGATAGCGGTCGTATCGAGTTACTTTACATCCCGGAAATTAAATGATGCGGCAAACG
AGCGTCTTGCCATTCAACAGGATTTGCGGAATGCGGCAACATTGATTGTCCGCGATGCAAGAATGGCGGGGAGCTTCGGT
TGTTTCAATATGTCTGAGCATACCGAAAAGGATGTTTTTTTCGGTGTGACGCAAAAAAAACCTCTTTTTTCCTTAAACTT
AAAAAGGAACAGTACAAATAAACTTATCCCCATAGCGGAATCTCCAAATATCGGATATCAGGGTTTTACCCAGCGCCTTA
ACGCATTGATTTTCCAATACGGAATCGATGATGCTAATGCAAGCGCCGAGACTACCGTCGTCAGCAGCTGTGGCGCAATA
TCGAAACCGGGTAAGCAAATCCCTACTTTAGAAGATGCAAAAAAAGAATTGAAGATTCAGGATTCTGATAAGGAGCAAAA
TGGCAATATAGCGCGTCAAAGGCATGTGGTCAATGCCTATGCGGTCGGCAGGTTTGGCAATAATGAGGAAGGTTTGTTCC
GCTTCCAATTGGATGATAAGGGCGAGTGGGGTAATCCTCAGTTGCTCGCGAAAAAGGTTAAACGTATGGATGTGCGGTAT
ATCTATGTTTCCGGTTGTCCTGAAGATGAAGATGCCGGCAAAGAGGAACAATTCAAATATACGGGTAAATTCGACAGCTC
TGTTACGCCTGCCGGGGTGGAGGTTTTATTGGATAGCGGTAGTGATGCCAAGATTGCCGCTTCTTCAGATAATATTATTT
ATGCTTACCGTATCAATGCGACAATACGCGGGGGAAATGTATGCGCAAACAGAACGCTTTGA
Domains
No domain identified.
3D structure
| Source | ID | Structure |
|---|
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| pilJ | Neisseria gonorrhoeae MS11 |
88.924 |
100 |
0.898 |