Detailed information    

insolico Bioinformatically predicted

Overview

Name   codY   Type   Regulator
Locus tag   ACEPXO_RS04755 Genome accession   NZ_CP168323
Coordinates   979790..980575 (-) Length   261 a.a.
NCBI ID   WP_100831581.1    Uniprot ID   -
Organism   Streptococcus agalactiae strain SA2BKE     
Function   repress the expression of comX (predicted from homology)   
Competence regulation

Genomic Context

Location: 974790..985575
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACEPXO_RS04735 (ACEPXO_04735) - 976504..977334 (-) 831 WP_017647886.1 pyruvate, water dikinase regulatory protein -
  ACEPXO_RS04740 (ACEPXO_04740) - 977345..977917 (-) 573 WP_373377218.1 helix-turn-helix transcriptional regulator -
  ACEPXO_RS04745 (ACEPXO_04745) - 978163..979128 (+) 966 WP_000153115.1 3-hydroxyacyl-CoA dehydrogenase -
  ACEPXO_RS04750 (ACEPXO_04750) - 979175..979723 (-) 549 WP_000158740.1 cysteine hydrolase family protein -
  ACEPXO_RS04755 (ACEPXO_04755) codY 979790..980575 (-) 786 WP_100831581.1 GTP-sensing pleiotropic transcriptional regulator CodY Regulator
  ACEPXO_RS04760 (ACEPXO_04760) - 980701..981912 (-) 1212 WP_000688108.1 pyridoxal phosphate-dependent aminotransferase -
  ACEPXO_RS04765 (ACEPXO_04765) - 982179..982631 (+) 453 WP_000080032.1 universal stress protein -
  ACEPXO_RS04770 (ACEPXO_04770) - 982687..984069 (-) 1383 WP_000974899.1 HAD-IIB family hydrolase -
  ACEPXO_RS04775 (ACEPXO_04775) - 984138..985100 (+) 963 WP_000723059.1 asparaginase -

Sequence

Protein


Download         Length: 261 a.a.        Molecular weight: 28945.06 Da        Isoelectric Point: 4.4520

>NTDB_id=935634 ACEPXO_RS04755 WP_100831581.1 979790..980575(-) (codY) [Streptococcus agalactiae strain SA2BKE]
MPNLLEKTRKITSILQRSVDSLDAELPYNTMAAQLADIIDCNACIINGGGNLLGYAMKYKTNTDRVEEFFETKQFPDYYV
KSASRVYDTEASLSVDNDLSIFPVETKENFQDGITTIAPIYGGGMRLGTFIIWRNDKEFSDDDLILVEIASTVVGIQLLN
LQTENLEENIRKQTAVTMAINTLSYSEMKAVAAILGELDGLEGRLTASVIADRIGITRSVIVNALRKLESAGIIESRSLG
MKGTYLKVINEGIFDKLKEYN

Nucleotide


Download         Length: 786 bp        

>NTDB_id=935634 ACEPXO_RS04755 WP_100831581.1 979790..980575(-) (codY) [Streptococcus agalactiae strain SA2BKE]
ATGCCGAATTTATTAGAAAAAACTAGAAAAATTACATCCATCTTACAGCGTTCCGTAGATAGCTTAGATGCCGAACTACC
ATATAATACAATGGCGGCTCAATTAGCTGATATTATTGACTGTAACGCATGTATTATTAATGGTGGTGGTAACTTACTTG
GCTATGCCATGAAATATAAAACAAACACTGACCGTGTGGAAGAATTTTTTGAAACAAAACAATTCCCAGATTACTATGTT
AAATCTGCTAGTCGTGTTTATGATACAGAAGCTAGCTTATCAGTAGATAATGATTTGTCAATTTTCCCAGTTGAGACAAA
GGAAAACTTCCAAGATGGTATTACAACAATCGCTCCAATTTATGGTGGTGGAATGCGCTTGGGAACATTTATTATCTGGC
GTAATGATAAAGAATTTAGCGACGATGATTTGATTTTAGTTGAAATTGCAAGCACCGTTGTTGGTATTCAATTACTTAAC
CTTCAAACAGAAAATCTAGAAGAAAATATTCGTAAACAAACAGCGGTGACAATGGCTATCAACACTCTATCTTATTCAGA
AATGAAAGCTGTAGCTGCTATCTTAGGAGAATTAGATGGACTTGAAGGACGCCTAACGGCATCTGTTATTGCAGACCGTA
TTGGAATTACACGTTCCGTTATTGTAAATGCTCTTCGTAAATTGGAGTCTGCGGGAATCATTGAGAGCCGCTCACTCGGT
ATGAAGGGAACATACCTCAAAGTTATTAACGAAGGTATTTTTGACAAATTAAAAGAATATAATTAA

Domains

Predicted by InterProScan.

CodY helix-turn-helix domain (HTH_CodY)

(201-261)

CodY GAF-like domain (CodY)

(3-182)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  codY Lactococcus lactis subsp. lactis strain DGCC12653

67.05

100

0.671
  codY Bacillus subtilis subsp. subtilis str. 168

51.417

94.636

0.487