Detailed information    

insolico Bioinformatically predicted

Overview

Name   rarA   Type   Machinery gene
Locus tag   PGK76_RS07990 Genome accession   NZ_CP168322
Coordinates   1705060..1706337 (-) Length   425 a.a.
NCBI ID   WP_154468444.1    Uniprot ID   -
Organism   Riemerella anatipestifer strain RCAD0866     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1700060..1711337
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  PGK76_RS07965 (PGK76_007965) - 1700561..1702309 (+) 1749 WP_154468446.1 TrkH family potassium uptake protein -
  PGK76_RS07970 (PGK76_007970) - 1702317..1703009 (+) 693 WP_014938997.1 TrkA family potassium uptake protein -
  PGK76_RS07975 (PGK76_007975) - 1703013..1703633 (+) 621 WP_014938998.1 CoA pyrophosphatase -
  PGK76_RS07980 (PGK76_007980) - 1703662..1704468 (+) 807 WP_004917734.1 1-acyl-sn-glycerol-3-phosphate acyltransferase -
  PGK76_RS07985 (PGK76_007985) - 1704452..1705063 (+) 612 WP_154468445.1 L-threonylcarbamoyladenylate synthase -
  PGK76_RS07990 (PGK76_007990) rarA 1705060..1706337 (-) 1278 WP_154468444.1 replication-associated recombination protein A Machinery gene
  PGK76_RS07995 (PGK76_007995) yidD 1706417..1706671 (+) 255 WP_154468443.1 membrane protein insertion efficiency factor YidD -
  PGK76_RS08000 (PGK76_008000) lgt 1706678..1707529 (+) 852 WP_154468442.1 prolipoprotein diacylglyceryl transferase -
  PGK76_RS08005 (PGK76_008005) mscL 1707670..1708041 (+) 372 WP_004917723.1 large conductance mechanosensitive channel protein MscL -
  PGK76_RS08010 (PGK76_008010) - 1708118..1708774 (+) 657 WP_004917720.1 YggS family pyridoxal phosphate-dependent enzyme -
  PGK76_RS08015 (PGK76_008015) - 1708811..1709995 (+) 1185 WP_229578736.1 sigma-54 dependent transcriptional regulator -

Sequence

Protein


Download         Length: 425 a.a.        Molecular weight: 47533.22 Da        Isoelectric Point: 6.5104

>NTDB_id=935581 PGK76_RS07990 WP_154468444.1 1705060..1706337(-) (rarA) [Riemerella anatipestifer strain RCAD0866]
MNSNIPLAEKLRPKTLDEMLGQEHLTGKDGTIRKMLENDRLNSLILWGPPGTGKTTLAEILSEQSGRKFFKLSAVSSGVK
EVREVIDEAQKQHLFSGKSPILFIDEIHRFNKSQQDSLLHAVEKGWVVLIGATTENPSFEVVSALLSRSQVYILKPLSYE
KLEELATIAVARFNQDENTDFTIENNQGFIQYSGGDARKLINSVEWVLNQYKGSGQNQLSSEAILKILQETVPVYDKNGE
QHYDVISAFIKSIRGSDVNAALYWLGRMLVGGEDIKFIARRLLILAAEDIGLANPNALTMANSCFQSVNVIGYPESRIIL
SECVIYLAASPKSNSAYQAINEAMAMAKKTAHLPVPLHLRNAPTKLMKEMDYGKDYRYAHAYEGNFVPQEFLPEELSGVS
FYCSGDNATERKIKEQISKKWGDKY

Nucleotide


Download         Length: 1278 bp        

>NTDB_id=935581 PGK76_RS07990 WP_154468444.1 1705060..1706337(-) (rarA) [Riemerella anatipestifer strain RCAD0866]
TTGAATTCAAATATCCCTTTAGCAGAGAAATTGCGCCCCAAAACTTTAGATGAAATGCTTGGACAAGAGCATCTTACAGG
TAAAGATGGAACGATAAGAAAAATGTTGGAAAATGATCGACTTAATTCTTTGATTTTATGGGGACCTCCAGGAACGGGTA
AAACTACCTTAGCGGAAATTCTTTCGGAGCAATCGGGACGAAAATTTTTTAAACTTTCTGCGGTTTCTAGTGGGGTGAAA
GAGGTAAGAGAAGTGATAGATGAGGCCCAAAAGCAACATTTGTTTTCTGGTAAATCTCCTATTTTATTTATAGATGAAAT
TCATAGATTTAACAAGTCACAACAGGATTCTTTGCTTCACGCTGTGGAAAAAGGCTGGGTGGTTTTGATAGGAGCAACTA
CCGAAAATCCTAGCTTTGAGGTGGTTTCGGCATTATTGTCTCGTTCTCAAGTTTATATTTTGAAACCATTGAGTTACGAA
AAATTGGAAGAACTGGCTACTATTGCGGTCGCTCGTTTTAATCAAGATGAAAATACAGATTTTACTATTGAAAACAATCA
AGGGTTTATACAATATTCGGGAGGCGATGCTAGAAAACTCATTAACTCAGTAGAGTGGGTGCTTAATCAGTATAAAGGCT
CTGGGCAAAACCAGTTATCTAGTGAGGCTATTCTGAAAATTTTACAAGAAACCGTACCTGTTTATGATAAAAATGGTGAG
CAACATTATGATGTAATTTCAGCTTTTATTAAATCTATTAGAGGGAGTGATGTTAATGCCGCTTTGTACTGGCTAGGGAG
AATGCTCGTGGGAGGCGAAGATATTAAATTTATTGCAAGGCGACTTTTGATATTGGCGGCAGAAGATATAGGTTTGGCTA
ACCCTAACGCTCTCACAATGGCTAACAGTTGTTTTCAATCAGTTAATGTTATAGGTTATCCAGAATCTCGTATTATCCTT
AGCGAATGTGTGATTTATTTAGCGGCTTCACCTAAGAGTAATTCGGCGTATCAAGCCATTAATGAGGCAATGGCAATGGC
GAAAAAAACAGCTCATTTGCCCGTGCCATTGCACTTAAGAAATGCTCCTACAAAACTGATGAAAGAAATGGACTATGGTA
AAGATTACCGCTATGCTCACGCCTATGAGGGAAATTTTGTGCCACAAGAATTTCTTCCTGAAGAATTATCTGGAGTTTCT
TTTTATTGTTCAGGAGATAATGCCACCGAAAGAAAAATAAAAGAACAAATTTCTAAAAAATGGGGCGATAAATACTAG

Domains

Predicted by InterProScan.

ATPase family associated with various cellular activities (AAA) (AAA)

(44-155)

AAA C-terminal domain (AAA_assoc_2)

(187-254)

MgsA AAA+ ATPase C terminal (MgsA_C)

(255-419)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rarA Bacillus subtilis subsp. subtilis str. 168

40.148

95.529

0.384