Detailed information    

insolico Bioinformatically predicted

Overview

Name   rarA   Type   Machinery gene
Locus tag   PG338_RS09870 Genome accession   NZ_CP168321
Coordinates   2091607..2092884 (+) Length   425 a.a.
NCBI ID   WP_004917728.1    Uniprot ID   -
Organism   Riemerella anatipestifer strain RCAD1242     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 2086607..2097884
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  PG338_RS09845 (PG338_009845) - 2087948..2089132 (-) 1185 WP_004917716.1 sigma-54 dependent transcriptional regulator -
  PG338_RS09850 (PG338_009850) - 2089169..2089825 (-) 657 WP_004917720.1 YggS family pyridoxal phosphate-dependent enzyme -
  PG338_RS09855 (PG338_009855) mscL 2089902..2090273 (-) 372 WP_004917723.1 large conductance mechanosensitive channel protein MscL -
  PG338_RS09860 (PG338_009860) lgt 2090414..2091265 (-) 852 WP_004917725.1 prolipoprotein diacylglyceryl transferase -
  PG338_RS09865 (PG338_009865) yidD 2091273..2091527 (-) 255 WP_013447220.1 membrane protein insertion efficiency factor YidD -
  PG338_RS09870 (PG338_009870) rarA 2091607..2092884 (+) 1278 WP_004917728.1 replication-associated recombination protein A Machinery gene
  PG338_RS09875 (PG338_009875) - 2092881..2093492 (-) 612 WP_004917730.1 L-threonylcarbamoyladenylate synthase -
  PG338_RS09880 (PG338_009880) - 2093476..2094282 (-) 807 WP_004917734.1 1-acyl-sn-glycerol-3-phosphate acyltransferase -
  PG338_RS09885 (PG338_009885) - 2094311..2094931 (-) 621 WP_004917736.1 CoA pyrophosphatase -
  PG338_RS09890 (PG338_009890) - 2094935..2095627 (-) 693 WP_004917739.1 TrkA family potassium uptake protein -
  PG338_RS09895 (PG338_009895) - 2095635..2097383 (-) 1749 WP_004917741.1 TrkH family potassium uptake protein -

Sequence

Protein


Download         Length: 425 a.a.        Molecular weight: 47550.20 Da        Isoelectric Point: 6.9193

>NTDB_id=935544 PG338_RS09870 WP_004917728.1 2091607..2092884(+) (rarA) [Riemerella anatipestifer strain RCAD1242]
MNSNIPLAEKLRPKTLDEMLGQEHLTGKDGTIRKMLDTDRLNSLILWGPPGTGKTTLAEILSEQSGRKFFKLSAVSSGVK
EVREVIDDAKKQHLFSGKSPILFIDEIHRFNKSQQDSLLHAVEKGWVILIGATTENPSFEVVSALLSRSQVYILKPLSYE
KLEELATIAVARFNQDENTDFTIENNQGFIQYSGGDARKLINSVEWVLNQYKGSGQNQLSSETILKVLQETIPVYDKNGE
QHYDVISAFIKSIRGSDVNAALYWLGRMLVGGEDIKFIARRLLILAAEDIGLANPNALTMANSCFQSVNVIGYPESRIIL
SECVIYLAASPKSNSAYQAINEALALAKKTAHLPVPLHLRNAPTKLMKEMDYGKDYRYAHAYEGSFVSQEFFPEELSGVS
FYRSGDNATERKIKEQISKKWGDKY

Nucleotide


Download         Length: 1278 bp        

>NTDB_id=935544 PG338_RS09870 WP_004917728.1 2091607..2092884(+) (rarA) [Riemerella anatipestifer strain RCAD1242]
TTGAATTCAAATATCCCTTTAGCAGAGAAATTACGCCCTAAAACCTTAGATGAAATGCTTGGGCAAGAACATCTTACAGG
TAAAGACGGAACGATAAGAAAAATGTTGGATACTGACCGACTTAATTCTCTGATTTTATGGGGACCTCCAGGAACGGGTA
AAACTACCTTAGCAGAAATTCTTTCGGAGCAATCGGGACGAAAATTTTTTAAACTTTCTGCGGTTTCTAGTGGGGTAAAA
GAGGTAAGAGAAGTGATAGATGATGCCAAAAAGCAACATTTGTTTTCTGGTAAATCTCCTATTTTGTTTATAGATGAAAT
TCATAGATTTAACAAATCACAACAGGATTCTTTGCTTCACGCTGTGGAAAAAGGCTGGGTGATTCTGATAGGAGCAACTA
CCGAAAATCCTAGTTTTGAGGTCGTTTCGGCATTATTGTCTCGTTCTCAAGTTTATATTTTGAAACCATTGAGTTACGAA
AAATTGGAAGAACTGGCTACTATTGCGGTCGCTCGTTTTAATCAAGATGAAAATACAGATTTTACTATTGAAAACAATCA
AGGGTTTATACAATATTCGGGAGGCGATGCTAGAAAGCTCATTAACTCAGTAGAGTGGGTGCTTAATCAGTATAAAGGCT
CTGGGCAAAACCAGTTATCTAGTGAGACTATTCTGAAAGTTTTACAAGAAACTATACCTGTTTATGATAAAAATGGAGAG
CAGCATTATGATGTAATTTCAGCTTTTATAAAATCCATTAGAGGGAGCGATGTTAATGCTGCTTTGTATTGGTTAGGGAG
AATGCTCGTGGGGGGCGAAGATATTAAGTTTATTGCAAGGCGACTTTTGATATTGGCGGCAGAAGATATAGGCTTGGCTA
ATCCTAACGCTCTTACAATGGCTAACAGTTGTTTTCAGTCGGTTAATGTTATAGGTTATCCAGAATCTCGTATTATCCTT
AGCGAATGTGTGATTTATTTAGCGGCCTCACCTAAGAGTAATTCAGCGTATCAAGCTATCAATGAGGCGTTGGCGTTGGC
GAAAAAAACAGCTCATTTGCCTGTGCCGTTGCACCTAAGAAATGCACCTACAAAACTGATGAAAGAAATGGACTATGGTA
AAGATTACCGCTACGCTCACGCCTACGAGGGAAGTTTTGTATCACAAGAATTTTTTCCTGAAGAATTATCTGGAGTTTCT
TTTTATCGTTCAGGAGATAATGCCACCGAAAGAAAAATAAAAGAACAAATTTCTAAAAAGTGGGGCGATAAATACTAG

Domains

Predicted by InterProScan.

AAA C-terminal domain (AAA_assoc_2)

(187-254)

MgsA AAA+ ATPase C terminal (MgsA_C)

(255-419)

ATPase family associated with various cellular activities (AAA) (AAA)

(44-155)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rarA Bacillus subtilis subsp. subtilis str. 168

40.541

95.765

0.388