Detailed information    

insolico Bioinformatically predicted

Overview

Name   rarA   Type   Machinery gene
Locus tag   ACD268_RS02550 Genome accession   NZ_CP168299
Coordinates   473761..475032 (-) Length   423 a.a.
NCBI ID   WP_050200384.1    Uniprot ID   -
Organism   Streptococcus pneumoniae strain FC1     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 468761..480032
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACD268_RS02530 (ACD268_02530) - 469350..470240 (+) 891 WP_000797961.1 carbohydrate ABC transporter permease -
  ACD268_RS02535 (ACD268_02535) - 470269..471885 (+) 1617 WP_050200385.1 ABC transporter substrate-binding protein -
  ACD268_RS02540 (ACD268_02540) - 471895..473214 (+) 1320 WP_330789184.1 glycoside hydrolase family 32 protein -
  ACD268_RS02550 (ACD268_02550) rarA 473761..475032 (-) 1272 WP_050200384.1 replication-associated recombination protein A Machinery gene
  ACD268_RS02555 (ACD268_02555) - 475302..475541 (+) 240 WP_000818078.1 hypothetical protein -
  ACD268_RS02560 (ACD268_02560) - 475706..475885 (+) 180 WP_001048906.1 hypothetical protein -
  ACD268_RS02565 (ACD268_02565) - 476022..476201 (+) 180 WP_001132284.1 type II toxin-antitoxin system HicA family toxin -
  ACD268_RS02570 (ACD268_02570) - 476238..476690 (+) 453 WP_000961810.1 type II toxin-antitoxin system HicB family antitoxin -
  ACD268_RS02575 (ACD268_02575) - 476981..477451 (+) 471 WP_000257105.1 DUF3013 family protein -
  ACD268_RS02580 (ACD268_02580) - 477470..478573 (+) 1104 WP_000719717.1 site-2 protease family protein -
  ACD268_RS02585 (ACD268_02585) - 478539..478967 (+) 429 WP_000418175.1 NUDIX hydrolase -

Sequence

Protein


Download         Length: 423 a.a.        Molecular weight: 46979.47 Da        Isoelectric Point: 6.1959

>NTDB_id=935401 ACD268_RS02550 WP_050200384.1 473761..475032(-) (rarA) [Streptococcus pneumoniae strain FC1]
MPDNLALRMRPKTIDQVIGQEHLVGPGKIIRRMVEANRLSSMILYGPPGIGKTSIASAIAGTTKYAFRTFNATVDSKKRL
QEISEEAKFSGGLVLLLDEIHRLDKTKQDFLLPLLESGLVIMIGATTENPFFSVTPAIRSRVQIFELEPLSNQDVKEALQ
IALSNPERGFDFPIELDEDALDFIATSTNGDLRSAFNSLDLAVLSTPENDKGIRHITLDIMENSLQRSYITMDKDGDGHY
DVLSALQKSIRGSDVDASLHYTARLIEAGDLPSLARRLTVIAYEDIGLANPEAQIHTVTALDAAQKIGFPEARILIANVV
IDLALSPKSNSAYVAMDKALADLKTSGHLPIPRHLRDGHYSGSKELGNAQDYLYPHNYPGNWVKQDYLPEKIRNHHYFQA
EDTGKYERALAQRKEAIDHLRKI

Nucleotide


Download         Length: 1272 bp        

>NTDB_id=935401 ACD268_RS02550 WP_050200384.1 473761..475032(-) (rarA) [Streptococcus pneumoniae strain FC1]
ATGCCAGACAATCTCGCGCTTCGCATGCGCCCTAAAACCATCGACCAGGTCATCGGTCAGGAGCATCTGGTCGGACCTGG
AAAAATCATCCGCCGCATGGTGGAAGCCAACCGCCTGTCCTCCATGATTCTATATGGCCCTCCGGGAATCGGCAAAACCA
GTATTGCCTCTGCCATCGCTGGAACGACCAAGTATGCCTTTCGAACTTTCAATGCGACAGTTGATAGTAAAAAGCGACTG
CAAGAAATCTCGGAAGAAGCTAAATTTTCTGGTGGTCTCGTCCTATTGCTAGACGAAATTCATCGACTAGATAAGACCAA
GCAAGACTTCCTCTTGCCTCTCTTGGAAAGTGGACTGGTCATCATGATTGGAGCAACGACTGAAAATCCTTTCTTCTCTG
TCACTCCTGCCATTCGTAGCCGTGTTCAAATTTTCGAGTTGGAACCTCTGTCTAACCAAGACGTCAAAGAGGCCCTGCAG
ATAGCTCTAAGTAACCCTGAACGTGGTTTTGATTTTCCAATAGAACTAGATGAGGATGCGCTGGATTTCATCGCAACCTC
TACAAACGGAGACCTTCGCTCTGCCTTTAACTCACTGGACTTGGCTGTTCTCTCTACCCCTGAGAATGACAAGGGCATTC
GCCACATCACCTTAGACATCATGGAAAATAGTCTTCAGAGAAGCTACATCACTATGGACAAGGATGGAGACGGTCACTAT
GATGTTCTATCTGCCCTGCAAAAGTCTATCCGTGGCTCAGATGTGGATGCCAGTCTCCACTATACTGCCCGCTTGATTGA
GGCTGGGGATCTGCCTAGTCTCGCTCGTCGCTTGACTGTTATCGCCTATGAAGATATCGGCTTAGCCAATCCTGAGGCCC
AGATTCATACCGTGACTGCTCTGGATGCCGCCCAGAAGATTGGGTTCCCAGAAGCCCGCATTCTCATTGCCAATGTCGTG
ATTGATTTGGCCCTTTCTCCAAAATCCAACTCAGCCTATGTAGCTATGGATAAGGCACTTGCTGACCTCAAAACATCAGG
GCACTTGCCTATTCCGCGACACCTGCGTGATGGGCACTACAGTGGAAGCAAGGAACTGGGGAATGCCCAAGACTATCTCT
ATCCACACAACTATCCTGGAAATTGGGTCAAGCAAGACTATCTGCCAGAAAAAATTCGTAATCATCACTATTTCCAAGCA
GAAGATACTGGTAAATATGAACGGGCTTTGGCTCAAAGAAAGGAAGCTATCGACCATTTGCGAAAAATCTGA

Domains

Predicted by InterProScan.

AAA C-terminal domain (AAA_assoc_2)

(173-251)

MgsA AAA+ ATPase C terminal (MgsA_C)

(252-416)

ATPase family associated with various cellular activities (AAA) (AAA)

(42-144)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rarA Bacillus subtilis subsp. subtilis str. 168

58.191

96.69

0.563