Detailed information    

insolico Bioinformatically predicted

Overview

Name   codY   Type   Regulator
Locus tag   V5G23_RS21380 Genome accession   NZ_CP144925
Coordinates   4078477..4079256 (-) Length   259 a.a.
NCBI ID   WP_003181756.1    Uniprot ID   A0A1Y0YKK2
Organism   Bacillus licheniformis strain CP13     
Function   repression of comK (predicted from homology)   
Competence regulation

Genomic Context

Location: 4073477..4084256
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  V5G23_RS21350 (V5G23_21350) fliH 4073518..4074285 (-) 768 WP_009328518.1 flagellar assembly protein FliH -
  V5G23_RS21355 (V5G23_21355) fliG 4074269..4075285 (-) 1017 WP_003181768.1 flagellar motor switch protein FliG -
  V5G23_RS21360 (V5G23_21360) fliF 4075299..4076900 (-) 1602 WP_003181766.1 flagellar basal-body MS-ring/collar protein FliF -
  V5G23_RS21365 (V5G23_21365) fliE 4076951..4077268 (-) 318 WP_003181764.1 flagellar hook-basal body complex protein FliE -
  V5G23_RS21370 (V5G23_21370) flgC 4077282..4077734 (-) 453 WP_009328519.1 flagellar basal body rod protein FlgC -
  V5G23_RS21375 (V5G23_21375) flgB 4077734..4078123 (-) 390 WP_003181758.1 flagellar basal body rod protein FlgB -
  V5G23_RS21380 (V5G23_21380) codY 4078477..4079256 (-) 780 WP_003181756.1 GTP-sensing pleiotropic transcriptional regulator CodY Regulator
  V5G23_RS21385 (V5G23_21385) hslU 4079295..4080707 (-) 1413 WP_254926368.1 HslU--HslV peptidase ATPase subunit -
  V5G23_RS21390 (V5G23_21390) hslV 4080715..4081260 (-) 546 WP_003181752.1 ATP-dependent protease subunit HslV -
  V5G23_RS21395 (V5G23_21395) xerC 4081274..4082188 (-) 915 WP_011197974.1 tyrosine recombinase XerC -
  V5G23_RS21400 (V5G23_21400) trmFO 4082255..4083559 (-) 1305 WP_003181748.1 FADH(2)-oxidizing methylenetetrahydrofolate--tRNA-(uracil(54)-C(5))- methyltransferase TrmFO -

Sequence

Protein


Download         Length: 259 a.a.        Molecular weight: 29073.42 Da        Isoelectric Point: 4.8196

>NTDB_id=935387 V5G23_RS21380 WP_003181756.1 4078477..4079256(-) (codY) [Bacillus licheniformis strain CP13]
MALLQKTRKINAMLQNAAGKPVNFKEMAETLRDVIDSNIFVVSRRGKLLGFSINQQIENDRMKKMLEERQFPEDYTKSLF
NIPETSSNLDINSEYTAFPVENRDLFQAGLTTVVPIIGGGERLGTLILSRLQEKFEDDDLILAEYGATVVGMEILREKAE
EIEEEARSKAVVQMAISSLSYSELEAIEHIFEELDGNEGLLVASKIADRVGITRSVIVNALRKLESAGVIESRSLGMKGT
YIKVLNNKFLMELEKLKSH

Nucleotide


Download         Length: 780 bp        

>NTDB_id=935387 V5G23_RS21380 WP_003181756.1 4078477..4079256(-) (codY) [Bacillus licheniformis strain CP13]
ATGGCTTTATTACAAAAAACAAGAAAGATTAATGCAATGCTGCAAAATGCGGCAGGGAAGCCGGTTAATTTTAAAGAAAT
GGCCGAAACGCTTCGCGATGTGATTGATTCGAACATTTTCGTCGTCAGCCGCAGAGGAAAGCTTCTCGGTTTCTCGATCA
ACCAGCAGATCGAAAATGACCGGATGAAAAAAATGCTTGAAGAGCGCCAGTTTCCTGAAGATTATACAAAAAGCCTGTTC
AACATTCCGGAAACGTCATCTAACCTTGACATCAACAGCGAATACACAGCTTTCCCTGTGGAAAACCGCGATTTGTTCCA
AGCGGGTCTGACCACGGTCGTTCCGATCATCGGAGGAGGCGAAAGACTGGGCACCTTGATTCTGTCCCGCCTTCAGGAGA
AATTCGAGGATGACGATCTGATCCTTGCCGAATATGGCGCCACTGTCGTAGGAATGGAAATTCTCAGAGAGAAAGCGGAA
GAGATCGAAGAGGAAGCGCGCAGCAAAGCGGTCGTTCAAATGGCGATCAGTTCACTATCTTACAGCGAGCTTGAAGCAAT
TGAACATATTTTTGAGGAGCTTGACGGAAATGAAGGCCTGCTTGTCGCTAGTAAAATTGCAGACCGCGTCGGCATCACCC
GCTCGGTCATTGTCAACGCGCTCCGTAAACTTGAAAGCGCCGGTGTCATTGAATCAAGGTCACTAGGGATGAAAGGCACA
TACATCAAAGTGCTGAACAACAAATTTTTGATGGAGTTAGAAAAACTAAAGTCTCATTAA

Domains

Predicted by InterproScan.

CodY helix-turn-helix domain (HTH_CodY)

(198-255)

CodY GAF-like domain (CodY)

(3-178)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A1Y0YKK2

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  codY Bacillus subtilis subsp. subtilis str. 168

94.595

100

0.946
  codY Lactococcus lactis subsp. lactis strain DGCC12653

47.451

98.456

0.467