Detailed information    

insolico Bioinformatically predicted

Overview

Name   comGB   Type   Machinery gene
Locus tag   V5G23_RS16390 Genome accession   NZ_CP144925
Coordinates   3180018..3181052 (+) Length   344 a.a.
NCBI ID   WP_075218359.1    Uniprot ID   -
Organism   Bacillus licheniformis strain CP13     
Function   dsDNA binding to the cell surface; assembly of the pseudopilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 3175018..3186052
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  V5G23_RS16350 (V5G23_16350) - 3175515..3175829 (+) 315 WP_003183487.1 MTH1187 family thiamine-binding protein -
  V5G23_RS16355 (V5G23_16355) - 3175890..3176063 (-) 174 WP_003183486.1 DUF2759 domain-containing protein -
  V5G23_RS16360 (V5G23_16360) - 3176219..3176857 (+) 639 WP_003183485.1 MBL fold metallo-hydrolase -
  V5G23_RS16365 (V5G23_16365) - 3176895..3177140 (-) 246 WP_003183483.1 DUF2626 domain-containing protein -
  V5G23_RS16370 (V5G23_16370) - 3177349..3177726 (+) 378 WP_003183482.1 Spx/MgsR family RNA polymerase-binding regulatory protein -
  V5G23_RS16380 (V5G23_16380) - 3177968..3178807 (+) 840 WP_003183480.1 STAS domain-containing protein -
  V5G23_RS16385 (V5G23_16385) comGA 3178964..3180028 (+) 1065 WP_003183477.1 competence type IV pilus ATPase ComGA Machinery gene
  V5G23_RS16390 (V5G23_16390) comGB 3180018..3181052 (+) 1035 WP_075218359.1 competence type IV pilus assembly protein ComGB Machinery gene
  V5G23_RS16395 (V5G23_16395) comGC 3181066..3181359 (+) 294 WP_003183466.1 competence type IV pilus major pilin ComGC Machinery gene
  V5G23_RS16400 (V5G23_16400) comGD 3181365..3181802 (+) 438 WP_009327905.1 competence type IV pilus minor pilin ComGD -
  V5G23_RS16405 (V5G23_16405) comGE 3181786..3182133 (+) 348 WP_009327907.1 competence type IV pilus minor pilin ComGE -
  V5G23_RS16410 (V5G23_16410) comGF 3182159..3182530 (+) 372 WP_003183461.1 competence type IV pilus minor pilin ComGF -
  V5G23_RS16415 (V5G23_16415) comGG 3182543..3182908 (+) 366 WP_003183459.1 competence type IV pilus minor pilin ComGG -
  V5G23_RS16420 (V5G23_16420) - 3182997..3183179 (+) 183 WP_003183456.1 YqzE family protein -
  V5G23_RS16425 (V5G23_16425) - 3183203..3183490 (-) 288 WP_223307118.1 YqzG/YhdC family protein -
  V5G23_RS16430 (V5G23_16430) tapA 3183800..3184528 (+) 729 WP_003183451.1 amyloid fiber anchoring/assembly protein TapA -
  V5G23_RS16435 (V5G23_16435) - 3184525..3185109 (+) 585 WP_003183449.1 signal peptidase I -
  V5G23_RS16440 (V5G23_16440) - 3185183..3185977 (+) 795 WP_003183447.1 TasA family protein -

Sequence

Protein


Download         Length: 344 a.a.        Molecular weight: 39786.00 Da        Isoelectric Point: 9.3543

>NTDB_id=935374 V5G23_RS16390 WP_075218359.1 3180018..3181052(+) (comGB) [Bacillus licheniformis strain CP13]
MKIKMKWPVREQADLLKKLGDMMQSGYTILDALSMLKLQLNERRRADLTFAMEKLTEGCPVFQVLEMISFHKDAVTIVYF
AEQHGNLPFAFRQSGELLHRKIAQSEKLKKAARYPLFLVLTFCVIISIMKSAIVPQFSAIYESMNVETSFATTLIFYVFD
HFYLFFAGLPLVAAALSLYYLCSFRHKPPEDKMAFLITIPLLGQTFKLFNSYFLSLQLSNLLQAGLSVYDSLKAFESQPF
LRFHKNEAKRLIERLKQGESLEQMLAGHPFYENDLAKAVAHGQLNGHLYRELYSYSQFLIERLERKAEKWTGLIQPLIYG
LTAAMILILYLSMLLPMYQMMNQL

Nucleotide


Download         Length: 1035 bp        

>NTDB_id=935374 V5G23_RS16390 WP_075218359.1 3180018..3181052(+) (comGB) [Bacillus licheniformis strain CP13]
ATGAAGATTAAAATGAAGTGGCCTGTCCGGGAACAGGCGGACCTTCTGAAAAAACTAGGAGACATGATGCAGAGTGGCTA
TACGATTTTGGATGCTTTAAGTATGCTGAAATTGCAATTGAATGAAAGACGAAGAGCGGATCTGACATTTGCGATGGAGA
AGCTGACAGAAGGGTGTCCTGTGTTTCAAGTTCTTGAAATGATTTCCTTTCACAAGGATGCTGTCACCATTGTTTACTTT
GCCGAACAGCACGGGAATTTGCCATTTGCCTTTAGGCAGAGCGGAGAGCTGCTTCACCGCAAGATCGCTCAAAGCGAAAA
ATTAAAGAAAGCCGCCAGATACCCCTTGTTTTTAGTTTTAACGTTCTGCGTCATCATCTCTATTATGAAATCAGCAATAG
TTCCGCAATTTTCCGCCATCTATGAATCGATGAACGTTGAAACGTCTTTTGCAACGACTCTCATCTTTTATGTTTTCGAT
CACTTTTATCTTTTTTTCGCGGGACTGCCGCTGGTTGCCGCAGCTCTATCCCTCTATTATCTGTGTTCATTCCGCCATAA
ACCTCCAGAAGACAAAATGGCCTTTCTCATTACAATTCCCTTGCTGGGCCAAACCTTCAAACTATTCAACAGCTATTTTT
TATCGCTCCAGCTGAGCAATCTTTTGCAAGCGGGTCTGTCTGTATATGACAGTTTAAAAGCATTTGAAAGCCAGCCGTTT
TTACGATTTCATAAAAATGAAGCGAAGCGCTTGATCGAGCGGCTGAAACAGGGGGAGAGTCTGGAGCAGATGCTGGCCGG
ACATCCGTTTTATGAAAATGATTTAGCAAAGGCTGTTGCACACGGCCAACTAAATGGGCACTTATACAGAGAGCTGTATT
CATATAGTCAGTTTTTGATTGAGCGGCTTGAAAGAAAGGCCGAAAAATGGACAGGCCTGATCCAGCCATTGATTTACGGG
CTAACCGCGGCGATGATATTAATTCTTTATTTGTCCATGCTTTTGCCAATGTATCAAATGATGAACCAGCTATAA

Domains

Predicted by InterproScan.

Type II secretion system (T2SS), protein F (T2SSF)

(216-336)

Type II secretion system (T2SS), protein F (T2SSF)

(16-135)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comGB Bacillus subtilis subsp. subtilis str. 168

56.347

93.895

0.529