Detailed information NTG0935328

Bioinformatically predicted

Overview

• Name: cytR
• Type: Regulator
• Locus tag: AAH689_RS10455
• Genome accession: NZ_CP168269
• Coordinates: 2189107..2190099 (+)
• Length: 330 a.a.
• NCBI ID: WP_000224470.1
• Uniprot ID: P0ACQ1
• Organism: Escherichia coli strain IH5
• Function: promote competence gene expression (predicted from homology) Competence regulation

Genomic Context

Location: 2184107..2195099

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
AAH689_RS10430 (AAH689_10430)	rbsD	2184231..2184650 (+)	420	WP_001301979.1	D-ribose pyranase	-
AAH689_RS10435 (AAH689_10435)	rbsA	2184658..2186163 (+)	1506	WP_000387770.1	ribose ABC transporter ATP-binding protein RbsA	-
AAH689_RS10440 (AAH689_10440)	rbsC	2186168..2187133 (+)	966	WP_000211857.1	ribose ABC transporter permease	-
AAH689_RS10445 (AAH689_10445)	rbsB	2187158..2188048 (+)	891	WP_001333816.1	ribose ABC transporter substrate-binding protein RbsB	-
AAH689_RS10450 (AAH689_10450)	rbsK	2188174..2189103 (+)	930	WP_001300603.1	ribokinase	-
AAH689_RS10455 (AAH689_10455)	cytR	2189107..2190099 (+)	993	WP_000224470.1	ribose operon transcriptional repressor RbsR	Regulator
AAH689_RS10460 (AAH689_10460)	mdtD	2190065..2191492 (-)	1428	WP_001280858.1	multidrug transporter subunit MdtD	-
AAH689_RS10465 (AAH689_10465)	yieP	2191515..2192207 (-)	693	WP_001131164.1	FadR/GntR family transcriptional regulator	-
AAH689_RS10470 (AAH689_10470)	-	2192764..2193432 (-)	669	WP_000241001.1	class I SAM-dependent methyltransferase	-
AAH689_RS10475 (AAH689_10475)	-	2193507..2193586 (-)	80	Protein_2071	DinI family protein	-
AAH689_RS10480 (AAH689_10480)	-	2193581..2193754 (+)	174	Protein_2072	tail fiber assembly protein	-
AAH689_RS10485 (AAH689_10485)	potB	2193987..2194850 (-)	864	WP_000799406.1	spermidine/putrescine ABC transporter permease PotB	-

Sequence

Protein

• Length: 330 a.a.
• Molecular weight: 36611.90 Da
• Isoelectric Point: 5.2141

>NTDB_id=935328 AAH689_RS10455 WP_000224470.1 2189107..2190099(+) (cytR) [Escherichia coli strain IH5]
MATMKDVARLAGVSTSTVSHVINKDRFVSEAITAKVEAAIKELNYAPSALARSLKLNQTHTIGMLITASTNPFYSELVRG
VERSCFERGYSLVLCNTEGDEQRMNRNLETLMQKRVDGLLLLCTETHQPSREIMQRYPTVPTVMMDWAPFDGDSDLIQDN
SLLGGDLATQYLIDKGHTRIACITGPLDKTPARLRLEGYRAAMKRAGLNIPDGYEVTGDFEFNGGFDAMRQLLSHPLRPQ
AVFTGNDAMAVGVYQALYQAELQVPQDIAVIGYDDIELASFMTPPLTTIHQPKDELGELAIDVLIHRITQPTLQQQRLQL
TPILMERGSA

Nucleotide

• Length: 993 bp

>NTDB_id=935328 AAH689_RS10455 WP_000224470.1 2189107..2190099(+) (cytR) [Escherichia coli strain IH5]
TTGGCTACAATGAAAGATGTTGCCCGCCTGGCGGGCGTTTCTACCTCAACAGTTTCTCACGTTATCAATAAAGATCGCTT
CGTCAGTGAAGCGATTACCGCCAAAGTTGAAGCGGCGATTAAAGAACTCAATTACGCGCCATCAGCTCTGGCGCGTAGCC
TCAAACTCAATCAAACACATACCATTGGCATGTTGATCACTGCCAGTACCAATCCTTTCTATTCAGAACTGGTGCGTGGC
GTTGAACGCAGCTGCTTCGAACGCGGTTATAGTCTCGTCCTTTGCAATACCGAAGGCGATGAACAGCGGATGAATCGCAA
TCTGGAAACGCTGATGCAAAAACGCGTTGATGGCTTGCTGTTACTGTGCACCGAAACGCATCAACCTTCGCGTGAAATCA
TGCAACGTTATCCGACAGTGCCTACTGTGATGATGGACTGGGCTCCGTTCGATGGCGACAGCGATCTTATTCAGGATAAC
TCGTTGCTGGGCGGAGACTTAGCAACGCAATATCTGATCGATAAAGGTCATACCCGTATCGCCTGTATTACCGGCCCGCT
GGATAAAACTCCGGCGCGCCTGCGGTTGGAAGGTTATCGGGCGGCGATGAAACGTGCGGGTCTCAACATTCCTGATGGCT
ATGAAGTCACTGGTGATTTTGAATTTAACGGCGGGTTTGACGCTATGCGCCAACTGCTATCACATCCGCTGCGTCCTCAG
GCCGTCTTTACCGGAAATGACGCTATGGCTGTTGGCGTTTACCAGGCGTTATATCAGGCAGAGTTACAGGTTCCGCAGGA
TATCGCGGTGATTGGCTATGACGATATCGAACTGGCAAGCTTTATGACGCCACCATTAACCACTATCCACCAACCGAAAG
ATGAACTGGGGGAGCTGGCGATTGATGTACTCATCCATCGGATAACCCAGCCGACCCTTCAGCAACAACGATTACAACTT
ACTCCGATTCTGATGGAACGCGGTTCGGCTTAG

Domains

Predicted by InterProScan.

• Periplasmic binding protein-like domain (Peripla_BP_3) (169-329)

• Bacterial regulatory proteins, lacI family (LacI) (3-48)

3D structure

• AlphaFold DB: P0ACQ1

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
cytR	Vibrio parahaemolyticus RIMD 2210633	37.048	100	0.373
cytR	Vibrio cholerae C6706	39.088	93.03	0.364