Detailed information    

insolico Bioinformatically predicted

Overview

Name   addB   Type   Machinery gene
Locus tag   V5G23_RS01605 Genome accession   NZ_CP144925
Coordinates   302093..305593 (-) Length   1166 a.a.
NCBI ID   WP_075218351.1    Uniprot ID   -
Organism   Bacillus licheniformis strain CP13     
Function   homologous recombination; plasmid transformation (predicted from homology)   
Homologous recombination

Genomic Context

Location: 297093..310593
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  V5G23_RS01595 (V5G23_01595) sbcD 297168..298349 (-) 1182 WP_073426309.1 exonuclease subunit SbcD -
  V5G23_RS01600 (V5G23_01600) addA 298414..302106 (-) 3693 WP_011197743.1 helicase-exonuclease AddAB subunit AddA Machinery gene
  V5G23_RS01605 (V5G23_01605) addB 302093..305593 (-) 3501 WP_075218351.1 helicase-exonuclease AddAB subunit AddB Machinery gene
  V5G23_RS01610 (V5G23_01610) modB 305703..306359 (-) 657 WP_009328900.1 molybdate ABC transporter permease subunit -
  V5G23_RS01615 (V5G23_01615) modA 306368..307162 (-) 795 WP_011197742.1 molybdate ABC transporter substrate-binding protein -
  V5G23_RS01620 (V5G23_01620) - 307366..307806 (+) 441 WP_009328902.1 ferritin-like domain-containing protein -
  V5G23_RS01625 (V5G23_01625) - 307896..308570 (+) 675 WP_009328903.1 response regulator transcription factor -
  V5G23_RS01630 (V5G23_01630) - 308567..309934 (+) 1368 WP_011197741.1 HAMP domain-containing sensor histidine kinase -

Sequence

Protein


Download         Length: 1166 a.a.        Molecular weight: 134436.55 Da        Isoelectric Point: 5.5700

>NTDB_id=935328 V5G23_RS01605 WP_075218351.1 302093..305593(-) (addB) [Bacillus licheniformis strain CP13]
MGAVFLSGRSGSGKTTFILNEIREKLRDEPLGKPIIFLVPDQMTFLMEYELSKTPDLGGTIRAQVYSFSRLAWRVLQHTG
GMNRPFLTGTGIQMLLRRLIEEHKGEFKVYQNASDKSGFTEQVERMLTEFKRHCLPPQSIRDMMEGTGKSEYEDERILSD
KLHDLYILYSKLEENLENQYVQSEDYLTLLAEQIPYAEEIRNAAVYVDGFHQFTPQEMSVLEQLMVHAEEITFSLTADKP
FTANSPNDLHLFRMTGKAYYDLYQKAKELGLDPSEVRLEETKRHRHHPELQHLERYFDERPAKPYPGQTESLRIMQASNR
RTEIEGIAREIHSLIRQGRFRLRDIAVIARNVEDYKDTIKEVFKDCELPFFIDGKESMQNHPLIELIRSTLDIIKGNWRY
EAVFRCVKTELLFPEGQPKERLREQIDQLENYCIAYGIKGDRWTSKDPFVYRRYASLDEDFAKTDKEIETENMLNELKGW
IVPPIHRLQKRLKKAETVREMAEVVYLYLEEADVPMKLEQERRLAEEGGRIAESRQHEQVWDAVIQLLDEFVEMMGTERI
SFALFQQMIETGLESLKFALIPPALDQVFIGNMDLSRMYGTKCTFLIGVNDGILPARPADDGVLSDEDREWLKRNGAQLA
ATGREQLLDENFLIYMTLSSPSEKLYVSYPIADSEGKTLLPSTVVKRLNELFPDSEEKMLIHEPEQLDDEAQLEFLVNKG
IALSHLAGQLGIWTRQYAISDVWWSTYNFLMNEPDRIFSQNILSSLFFRNKVENLNRHVSRDLYGEHIQGSVSRMETFKA
CPFSHFASHGLKLKERQFFKLEAPDIGQLFHSALKLISDRLHELKLDWRDLTKAQCETLSSDAVERLAPKLQKEILLSSN
RHHYVKQKLQKIIARVSGILSEHAKASGFAPVGIELGFGGKGPLPPMRFTLKNGCTMELVGRIDRVDKAESSKGLLLRIV
DYKSSDKGLDLAEVYYGLALQMLTYLDLSITHSTDWLGMKASPAGVLYFHVHDPMIQASVPLGLDEIEKEIFKKFKMKGL
LLGDQEAVKLMDTTLEQGRSNIISAGLKKDGSLRSDSDVVAEEDFHVLRRHIRRTFQQAGEEITDGKVSIEPYKLKDRTP
CTYCSYRSFCQFDESLEENEYRILKPEKDSVILERLKKEDEADGDF

Nucleotide


Download         Length: 3501 bp        

>NTDB_id=935328 V5G23_RS01605 WP_075218351.1 302093..305593(-) (addB) [Bacillus licheniformis strain CP13]
GTGGGAGCAGTATTTTTATCAGGCAGATCCGGGAGTGGGAAAACGACCTTTATCCTGAATGAAATCAGAGAAAAACTTCG
CGATGAACCGCTCGGAAAACCGATCATTTTTCTAGTCCCGGATCAAATGACGTTTTTAATGGAATACGAGCTTAGCAAAA
CACCAGATTTGGGCGGCACCATCCGCGCCCAAGTGTACAGTTTTTCACGGCTTGCCTGGCGAGTGCTCCAACACACCGGA
GGCATGAACCGGCCGTTCTTGACGGGAACGGGCATTCAGATGCTGCTGCGGAGACTGATTGAAGAGCATAAGGGCGAGTT
TAAAGTCTATCAAAACGCAAGCGATAAAAGCGGATTTACGGAGCAGGTGGAACGGATGCTGACCGAATTTAAACGGCACT
GTCTGCCGCCTCAAAGCATCCGGGATATGATGGAAGGGACAGGCAAGTCGGAATACGAAGATGAACGGATTCTTTCCGAT
AAATTGCACGACTTATATATTTTGTACAGCAAGCTTGAGGAAAATCTGGAGAATCAATATGTTCAATCTGAAGATTATTT
GACCCTTTTAGCCGAACAGATTCCGTATGCGGAAGAGATTAGAAACGCTGCCGTTTACGTTGACGGATTTCACCAATTCA
CGCCTCAGGAGATGAGCGTACTAGAACAGCTGATGGTACATGCCGAAGAGATCACGTTTTCGCTGACGGCGGATAAGCCG
TTTACGGCAAACAGCCCGAATGATCTCCATCTGTTCAGGATGACCGGGAAGGCGTACTATGACCTTTACCAAAAGGCGAA
GGAACTCGGCCTTGATCCGTCTGAAGTGCGGCTGGAAGAAACGAAACGGCACCGGCATCATCCGGAGCTTCAGCATCTTG
AACGCTATTTTGATGAACGTCCTGCAAAACCGTATCCCGGACAGACGGAATCGCTCCGCATCATGCAGGCGTCGAACAGA
AGAACCGAGATTGAAGGAATTGCGCGCGAGATTCATTCTTTAATCCGCCAGGGCCGGTTCCGGCTTAGGGATATTGCTGT
CATCGCCCGCAATGTTGAAGATTATAAAGATACGATAAAAGAAGTTTTTAAAGACTGCGAACTTCCTTTTTTCATAGACG
GCAAGGAATCGATGCAAAATCATCCGCTTATTGAGCTGATCCGTTCGACGCTTGATATCATTAAAGGAAATTGGCGGTAT
GAAGCCGTGTTCCGCTGTGTCAAAACGGAGCTTTTATTCCCGGAAGGACAGCCGAAGGAACGGCTGCGCGAACAGATTGA
CCAGCTTGAAAACTACTGTATTGCTTATGGCATTAAAGGAGACAGATGGACAAGCAAAGATCCGTTTGTTTACAGAAGAT
ACGCTTCACTGGATGAGGATTTTGCCAAGACAGACAAAGAGATTGAAACGGAAAATATGCTCAATGAACTAAAGGGCTGG
ATCGTTCCGCCGATTCACAGGCTGCAGAAGCGCTTGAAAAAAGCTGAAACAGTAAGGGAAATGGCCGAAGTCGTCTACCT
TTATCTTGAAGAAGCCGATGTTCCGATGAAGCTTGAACAGGAAAGGCGGCTAGCCGAAGAAGGCGGAAGGATTGCCGAGT
CGCGCCAGCATGAGCAAGTATGGGATGCCGTTATTCAACTGTTGGACGAGTTTGTTGAAATGATGGGCACAGAGCGGATT
TCGTTTGCGTTATTTCAGCAAATGATCGAAACCGGATTGGAGTCTTTGAAATTCGCGCTGATTCCGCCCGCACTTGATCA
AGTGTTTATCGGCAATATGGACCTTTCAAGGATGTACGGCACGAAATGTACATTTCTCATCGGTGTAAACGACGGCATAC
TTCCGGCGAGGCCTGCGGATGACGGCGTGCTTTCAGACGAGGACAGGGAGTGGCTGAAACGAAACGGCGCACAGCTGGCG
GCAACAGGGCGAGAGCAGCTATTGGACGAGAATTTTCTGATCTATATGACGCTTTCAAGCCCGTCTGAAAAGCTTTATGT
CTCCTATCCGATCGCTGATTCGGAAGGGAAGACGCTGCTTCCTTCAACAGTGGTGAAACGGCTGAATGAACTGTTCCCGG
ACAGCGAAGAAAAGATGCTGATTCATGAACCCGAGCAGCTGGACGATGAAGCCCAGCTTGAATTTCTCGTGAATAAAGGC
ATCGCCTTGAGCCATTTGGCAGGGCAGCTCGGCATCTGGACGAGGCAGTATGCGATCAGCGATGTATGGTGGAGTACATA
CAACTTTTTAATGAATGAGCCTGACCGCATCTTTTCTCAAAACATCCTGTCCAGCCTGTTTTTCAGAAACAAGGTCGAAA
ACCTAAACCGGCATGTGAGCCGCGATTTATACGGGGAGCACATTCAGGGAAGCGTGTCGCGGATGGAGACGTTCAAGGCC
TGTCCGTTTTCCCATTTTGCTTCGCACGGCTTAAAGCTGAAGGAACGCCAATTTTTCAAGCTTGAAGCTCCGGATATCGG
TCAGCTGTTCCACTCTGCGCTGAAGCTGATTTCAGACCGGCTTCACGAGCTTAAACTGGATTGGCGCGACTTAACGAAAG
CCCAGTGCGAGACTTTGTCAAGCGATGCAGTTGAACGGCTTGCGCCTAAACTGCAAAAGGAGATTCTGCTCAGTTCGAAC
CGTCATCATTATGTGAAGCAGAAGCTGCAAAAAATCATTGCCAGGGTATCGGGCATTTTAAGTGAGCATGCAAAAGCAAG
CGGCTTTGCCCCCGTCGGCATAGAGCTCGGATTCGGAGGGAAAGGTCCGCTTCCTCCAATGCGTTTCACCTTGAAGAACG
GCTGCACGATGGAGCTTGTCGGCCGGATCGACAGAGTGGATAAAGCGGAGAGCTCAAAAGGGCTGCTGCTTAGGATTGTT
GATTATAAATCAAGCGATAAAGGCCTCGATTTGGCCGAGGTGTATTACGGGCTTGCCCTGCAAATGCTGACATATCTCGA
TTTGTCGATCACGCATTCAACCGATTGGCTCGGCATGAAAGCATCCCCGGCAGGCGTGCTCTATTTTCATGTGCACGATC
CAATGATCCAGGCTTCAGTGCCGCTCGGCCTTGATGAAATAGAAAAAGAGATTTTCAAAAAGTTCAAGATGAAAGGGCTG
CTCCTGGGAGACCAGGAAGCGGTCAAGCTGATGGACACCACCCTGGAACAAGGCAGGTCGAATATTATCAGCGCCGGTTT
GAAAAAAGACGGCTCGCTCCGTTCGGATTCTGACGTTGTTGCAGAAGAGGATTTTCATGTATTGAGGCGTCATATCCGCC
GGACATTTCAGCAGGCCGGCGAGGAGATCACAGACGGCAAAGTGTCGATCGAGCCTTACAAGCTAAAAGACCGGACACCG
TGCACATATTGTTCATACCGGTCATTCTGCCAGTTTGACGAATCGCTTGAGGAAAACGAATACCGAATATTAAAACCTGA
AAAAGACAGCGTGATATTGGAGCGGCTGAAAAAGGAGGATGAGGCAGATGGAGATTTCTAA

Domains

Predicted by InterproScan.

PD-(D/E)XK nuclease superfamily (PDDEXK_1)

(790-1131)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  addB Bacillus subtilis subsp. subtilis str. 168

73.991

99.914

0.739