Detailed information    

insolico Bioinformatically predicted

Overview

Name   recD2   Type   Machinery gene
Locus tag   V5G21_RS17310 Genome accession   NZ_CP144921
Coordinates   3502245..3504530 (+) Length   761 a.a.
NCBI ID   WP_095294591.1    Uniprot ID   -
Organism   Shouchella rhizosphaerae strain CP20     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 3497245..3509530
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  V5G21_RS17285 (V5G21_17285) - 3497259..3498521 (-) 1263 WP_063609715.1 replication-associated recombination protein A -
  V5G21_RS17290 (V5G21_17290) - 3498804..3499223 (+) 420 WP_011246428.1 Rrf2 family transcriptional regulator -
  V5G21_RS17295 (V5G21_17295) - 3499257..3500417 (+) 1161 WP_095294614.1 cysteine desulfurase family protein -
  V5G21_RS17300 (V5G21_17300) mnmA 3500447..3501541 (+) 1095 WP_011246430.1 tRNA 2-thiouridine(34) synthase MnmA -
  V5G21_RS17305 (V5G21_17305) - 3501581..3502240 (+) 660 WP_011246431.1 tetratricopeptide repeat protein -
  V5G21_RS17310 (V5G21_17310) recD2 3502245..3504530 (+) 2286 WP_095294591.1 ATP-dependent RecD-like DNA helicase Machinery gene
  V5G21_RS17315 (V5G21_17315) - 3504581..3505051 (+) 471 WP_035204546.1 PRC-barrel domain-containing protein -
  V5G21_RS17320 (V5G21_17320) - 3505064..3505252 (+) 189 WP_011246434.1 hypothetical protein -
  V5G21_RS17325 (V5G21_17325) - 3505273..3505452 (+) 180 WP_035204549.1 hypothetical protein -
  V5G21_RS17330 (V5G21_17330) - 3505547..3506623 (+) 1077 WP_011246435.1 AI-2E family transporter -

Sequence

Protein


Download         Length: 761 a.a.        Molecular weight: 85193.75 Da        Isoelectric Point: 6.0977

>NTDB_id=935272 V5G21_RS17310 WP_095294591.1 3502245..3504530(+) (recD2) [Shouchella rhizosphaerae strain CP20]
MDNVGEKTLEKGFVKGKVVHVLFRNEENDYTVAMTRIEKTNEQIEGRKITVVGHLPELEVEETYLFFGQVAEHPRFGLQY
KVETFRRDLPQTKSGIIRFLSSDRFPGVGKKTAEAIVDALGERAISAIIEDRTVLNNIPKLKEDTATMLYNQLLEQQGAE
QVIIQLSQYGFGTELSMSVYRTYKLQALDVIRTNPYLLIQDVEGVGFRRADQLGAAIGLTGNHPERLRAGLLYLLRECCM
QQGHLYLQEEALITEGTALLSSPNVQIDASELETILIEMNEEGMLVREEDRIYMKSLYYAEKGIATNIRRILSQELTQEF
TEADIEKTLGHIEDTHAVTYSNTQKEAIATALRSPLLLLTGGPGTGKTTVIKGIVEAYAALHGLSLEVAAYKNKSFPLKL
TAPTGRASKRMAEATELPASTIHSLLGWKGSATGFEKGDHEQLEGELLIVDEMSMVDAWVANQLFKAIPKGMQVVLVGDE
NQLPSVGPGQVLKDLLEADVIPTIQLKDIYRQAEGSSIIELAHSMKDGVLPSDFLTKKADRVFFPCQPNQVQQAVWQICE
NAMKKGYSAKEIQVLAPMYRGQAGINELNTMLQSLFNPAKEGRRELPFGDVVFRKGDMVLQLVNNPEEGVYNGDRGEIVA
VFYAKETTEKKDQLVVSFDGLEVTYEKKDFSQLTHAYCCSIHKAQGSEFPIVVMPVVSSYMRMLRRNLLYTGITRAKQYL
LLCGDRKTMEQAIKHADEHRHSKLKERLQLLLSRTGNVHRG

Nucleotide


Download         Length: 2286 bp        

>NTDB_id=935272 V5G21_RS17310 WP_095294591.1 3502245..3504530(+) (recD2) [Shouchella rhizosphaerae strain CP20]
ATGGATAATGTTGGGGAAAAAACGCTGGAGAAAGGTTTTGTTAAAGGAAAAGTCGTTCATGTGTTGTTTCGCAATGAAGA
AAACGATTATACAGTGGCGATGACGCGGATTGAAAAGACGAATGAACAAATAGAAGGGCGCAAAATAACGGTTGTCGGCC
ATTTGCCTGAACTGGAAGTAGAGGAGACCTATTTATTTTTCGGGCAAGTCGCTGAACATCCACGCTTTGGCCTCCAATAC
AAAGTGGAAACGTTTAGGCGCGATTTGCCACAGACGAAAAGCGGAATTATTCGGTTTTTGTCAAGCGACCGTTTCCCTGG
CGTTGGCAAAAAGACAGCGGAAGCAATTGTCGACGCTCTCGGTGAAAGGGCCATTTCAGCTATTATTGAAGATCGAACGG
TATTAAACAACATCCCGAAGCTAAAAGAAGATACAGCGACGATGCTCTATAACCAACTTCTTGAGCAACAAGGCGCGGAG
CAAGTCATTATCCAACTGTCCCAATACGGGTTTGGCACAGAGTTGTCGATGAGTGTTTACCGAACGTACAAATTGCAAGC
ACTTGATGTTATCCGCACCAACCCGTATTTGCTCATTCAGGATGTAGAAGGAGTCGGCTTTCGCCGTGCAGACCAATTAG
GGGCGGCGATTGGCTTAACTGGGAACCATCCAGAGCGTTTGCGGGCGGGGCTGCTTTATTTGCTCCGGGAATGTTGTATG
CAACAAGGACATTTATACTTGCAGGAGGAAGCGCTCATTACGGAGGGGACTGCATTATTATCGAGCCCAAACGTCCAAAT
TGACGCTTCCGAGCTTGAGACCATCCTCATCGAAATGAATGAAGAGGGCATGCTCGTTCGTGAAGAAGACCGCATCTACA
TGAAGTCATTGTATTATGCAGAAAAAGGCATTGCCACCAACATCCGCCGAATTTTAAGCCAAGAACTGACACAAGAATTC
ACTGAAGCAGACATTGAAAAAACACTCGGGCACATTGAGGATACACATGCTGTTACGTATTCAAACACGCAAAAAGAAGC
GATTGCCACTGCTCTTCGTTCTCCGTTGTTGTTGCTGACAGGAGGGCCTGGAACAGGAAAGACTACGGTCATTAAAGGAA
TTGTGGAAGCTTATGCTGCGCTTCATGGGCTTTCTCTTGAAGTGGCTGCTTACAAAAACAAATCTTTCCCCCTTAAGTTG
ACTGCGCCCACTGGTCGAGCCAGCAAACGGATGGCTGAAGCAACGGAACTGCCTGCAAGCACGATACACAGCTTGCTCGG
CTGGAAAGGCAGTGCGACCGGCTTTGAAAAAGGCGACCATGAACAGCTTGAAGGGGAACTGCTAATTGTCGATGAGATGT
CGATGGTCGATGCCTGGGTTGCAAATCAGTTATTTAAAGCGATTCCCAAAGGCATGCAAGTCGTGTTAGTAGGGGATGAA
AACCAGTTGCCTTCTGTAGGGCCTGGCCAAGTATTAAAAGACCTTTTAGAAGCAGACGTTATTCCAACAATCCAATTAAA
GGACATTTACAGGCAAGCTGAAGGCTCTTCCATCATTGAGCTTGCCCACTCGATGAAAGATGGCGTGCTTCCAAGTGATT
TTTTAACGAAAAAGGCAGACCGCGTCTTTTTTCCTTGCCAGCCGAACCAAGTGCAACAAGCAGTTTGGCAAATTTGTGAA
AACGCCATGAAGAAAGGCTACAGTGCTAAGGAGATCCAAGTACTGGCACCCATGTACCGCGGGCAGGCAGGGATCAATGA
ATTAAACACGATGCTTCAGTCCCTATTTAATCCGGCAAAAGAAGGCCGCAGAGAGCTGCCGTTTGGGGATGTTGTTTTTC
GCAAAGGCGATATGGTCCTCCAGTTAGTCAACAATCCAGAGGAAGGCGTATACAACGGCGATAGAGGAGAAATTGTTGCT
GTTTTCTACGCTAAAGAGACGACGGAAAAAAAAGATCAGCTAGTGGTTTCCTTTGACGGACTGGAAGTCACCTATGAGAA
AAAAGACTTTTCACAGCTAACCCATGCCTATTGCTGTTCTATTCATAAAGCACAAGGAAGCGAATTTCCGATTGTGGTGA
TGCCAGTCGTGTCGAGCTACATGCGCATGCTGAGGCGGAACTTGCTTTATACAGGCATTACCCGGGCCAAGCAGTATTTG
CTCTTATGTGGCGATCGAAAAACGATGGAACAGGCGATTAAACATGCAGACGAGCACCGCCATTCCAAATTAAAGGAGCG
CCTTCAACTATTGCTTTCACGTACTGGTAACGTTCACCGGGGATAG

Domains

Predicted by InterproScan.

Helix-hairpin-helix containing domain (HHH_RecD2)

(155-246)

UvrD-like helicase C-terminal domain (UvrD_C_2)

(675-723)

AAA domain (AAA_30)

(340-540)

ATP-dependent RecD-like DNA helicase SH3 domain (SH3_13)

(588-658)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recD2 Bacillus subtilis subsp. subtilis str. 168

54.217

98.16

0.532