Detailed information    

insolico Bioinformatically predicted

Overview

Name   recJ   Type   Machinery gene
Locus tag   V5G21_RS17205 Genome accession   NZ_CP144921
Coordinates   3477939..3480296 (+) Length   785 a.a.
NCBI ID   WP_095236169.1    Uniprot ID   A0A268P606
Organism   Shouchella rhizosphaerae strain CP20     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 3472939..3485296
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  V5G21_RS17175 (V5G21_17175) - 3473012..3473251 (+) 240 WP_011246406.1 hypothetical protein -
  V5G21_RS17180 (V5G21_17180) spoVB 3473288..3474838 (-) 1551 WP_011246407.1 stage V sporulation protein B -
  V5G21_RS17185 (V5G21_17185) - 3475007..3475297 (+) 291 WP_011246408.1 post-transcriptional regulator -
  V5G21_RS17190 (V5G21_17190) secD 3475332..3476633 (+) 1302 WP_011246409.1 protein translocase subunit SecD -
  V5G21_RS17195 (V5G21_17195) secF 3476623..3477558 (+) 936 WP_073303973.1 protein translocase subunit SecF -
  V5G21_RS17200 (V5G21_17200) - 3477574..3477876 (+) 303 WP_011246411.1 LapA family protein -
  V5G21_RS17205 (V5G21_17205) recJ 3477939..3480296 (+) 2358 WP_095236169.1 single-stranded-DNA-specific exonuclease RecJ Machinery gene
  V5G21_RS17210 (V5G21_17210) - 3480286..3480801 (+) 516 WP_011246413.1 adenine phosphoribosyltransferase -
  V5G21_RS17215 (V5G21_17215) - 3480933..3483122 (+) 2190 WP_081427594.1 bifunctional (p)ppGpp synthetase/guanosine-3',5'-bis(diphosphate) 3'-pyrophosphohydrolase -
  V5G21_RS17220 (V5G21_17220) dtd 3483144..3483584 (+) 441 WP_011246415.1 D-aminoacyl-tRNA deacylase -
  V5G21_RS17225 (V5G21_17225) - 3483811..3484818 (+) 1008 WP_011246416.1 LacI family DNA-binding transcriptional regulator -

Sequence

Protein


Download         Length: 785 a.a.        Molecular weight: 87797.47 Da        Isoelectric Point: 4.9867

>NTDB_id=935271 V5G21_RS17205 WP_095236169.1 3477939..3480296(+) (recJ) [Shouchella rhizosphaerae strain CP20]
MLQSKTRWRILEQNELLAQELADELRVSMLTARLLVRRGIQTVQAAKRFLHYEEPTFYDPFLLKGMEETIERIALAVKRK
ERILVFGDYDADGVSSTSVMLTALQTYGADCDYYIPNRFTEGYGPNCPALDFAKRQGYHLVITVDTGISALNEAAHAKDI
GLDFIITDHHEPPPVLPEALAIINPKQPGCPYPFKELAGVGVAFKVAHALLGRLPEELLDYAVIGTIADLVPLIDENRLL
AKKGLRAIESSGRPGIRALKEVCGMKQEAMDADHIGFAIGPRLNAAGRLDSANPAVELLLADDEEEAKALATEIDSLNKE
RQAIVSKMTEEAIRLVETTYGTKIPHAIVVAKEGWNPGVIGIVASRLVEQFYRPTIVMSIDESSGLAKGSARSIEGFDMY
QELANNRDILPHFGGHPMAAGMTLKTEDIDDLRSRLIKQAKETLTDDMLTPATDIDLVAEVEDVTVQVIGELQALAPFGV
ANRKPIVLVEGAHISDMRRIGSNQNHLKIQFTGAQKPLDGIAFRMGHLFEEITPHAKLSAIGTVSLNEWNGKVKPQLIID
DLAVLEWQLFDWRSIQPNRLNSRLLDLPREKLVAISFQEGTKERLGLDVPVYDYRQAPSFFEAYVVLLDLPSNRVELESL
FSKKGEPSRVYVVFSEEEESFFQTNPNREQFKWYYGFIKKNQRFSLNQLGAKLEKHKGWSARTVEFMTTVFLELGFIKLD
DGIVEAVENPEKKALTASPTYQAKQEKAWLENEFVFASYQQLKEWFQAAIEGSAETKEESILNGL

Nucleotide


Download         Length: 2358 bp        

>NTDB_id=935271 V5G21_RS17205 WP_095236169.1 3477939..3480296(+) (recJ) [Shouchella rhizosphaerae strain CP20]
ATGTTGCAATCAAAAACAAGATGGCGCATTTTAGAACAAAACGAGCTGTTGGCGCAAGAGCTCGCAGACGAGCTGCGTGT
ATCGATGTTAACGGCCCGTCTTCTTGTACGCCGGGGAATCCAAACCGTCCAGGCGGCCAAGCGCTTTTTACACTACGAAG
AGCCGACGTTTTACGATCCCTTTTTGTTGAAAGGGATGGAGGAAACGATTGAACGAATTGCCCTCGCAGTCAAACGAAAA
GAACGCATTCTTGTTTTTGGGGACTATGATGCTGATGGCGTTAGTTCGACTTCCGTGATGCTAACAGCGTTACAAACGTA
TGGCGCGGACTGTGATTACTATATACCAAACCGTTTTACAGAAGGATACGGGCCCAATTGCCCAGCGCTAGACTTTGCAA
AAAGGCAAGGTTATCACTTAGTGATAACAGTCGATACAGGCATTTCTGCTTTGAATGAAGCTGCCCATGCCAAAGACATC
GGCCTGGATTTTATTATCACTGACCACCATGAGCCGCCGCCGGTTTTGCCAGAAGCATTGGCGATCATTAATCCTAAGCA
GCCTGGTTGCCCGTATCCATTTAAAGAGCTTGCCGGCGTAGGCGTTGCCTTTAAAGTTGCACACGCTTTGCTCGGGCGCC
TGCCTGAAGAGCTGCTCGATTACGCTGTGATCGGCACGATCGCCGACTTGGTGCCTCTCATTGATGAAAATCGGCTGCTG
GCCAAAAAGGGGCTTCGCGCGATTGAATCAAGCGGCCGCCCTGGGATCCGTGCCTTAAAGGAAGTATGCGGCATGAAGCA
GGAAGCAATGGATGCCGACCATATCGGCTTTGCGATTGGCCCTCGTCTAAATGCAGCAGGGCGGCTCGATTCTGCTAATC
CAGCTGTTGAGCTGCTCCTTGCTGATGATGAAGAAGAAGCAAAAGCGCTAGCCACAGAAATCGATAGCCTCAATAAAGAA
CGGCAAGCAATTGTTAGCAAAATGACAGAAGAAGCGATTCGCCTTGTGGAAACAACCTATGGCACAAAGATCCCCCATGC
CATCGTTGTAGCGAAGGAAGGCTGGAATCCAGGGGTCATCGGGATTGTCGCTTCTCGCCTTGTAGAGCAGTTTTACCGTC
CGACAATTGTCATGAGCATTGACGAATCTTCAGGACTTGCGAAAGGCTCAGCCAGAAGCATCGAAGGGTTTGACATGTAC
CAAGAATTGGCGAATAACCGGGATATACTTCCTCATTTTGGCGGACACCCGATGGCGGCAGGGATGACACTTAAAACCGA
GGACATTGACGACTTACGTTCTCGTTTAATCAAGCAAGCCAAGGAGACACTAACGGACGACATGCTTACGCCAGCCACGG
ATATAGACCTCGTTGCAGAAGTGGAGGATGTAACCGTTCAAGTGATTGGCGAGTTGCAGGCACTTGCCCCGTTTGGCGTT
GCCAACCGAAAACCGATTGTACTTGTTGAGGGTGCGCATATTTCCGATATGCGCCGGATTGGCAGCAACCAAAACCATTT
AAAAATCCAATTTACTGGCGCCCAAAAGCCGCTTGACGGAATTGCCTTTAGAATGGGGCATTTGTTTGAAGAGATCACGC
CACATGCAAAGTTATCTGCCATCGGAACGGTATCGTTGAATGAATGGAACGGAAAAGTAAAGCCACAACTTATTATTGAC
GATCTTGCCGTATTGGAGTGGCAACTATTTGATTGGCGCAGCATCCAGCCAAACCGCTTAAACAGCCGGTTGCTTGACTT
GCCTCGTGAAAAACTCGTCGCTATTTCCTTTCAAGAAGGGACAAAAGAAAGACTTGGGTTGGACGTACCCGTATATGATT
ACCGGCAAGCGCCTTCCTTTTTTGAAGCTTACGTCGTGTTGCTCGATTTGCCTAGCAACCGGGTTGAACTGGAAAGTCTT
TTTTCTAAGAAAGGGGAGCCAAGCCGTGTTTATGTTGTGTTCTCTGAGGAAGAAGAATCGTTTTTTCAAACGAATCCAAA
CCGCGAGCAGTTCAAATGGTATTATGGTTTTATTAAGAAAAACCAACGCTTTTCACTGAATCAACTCGGCGCGAAGCTCG
AAAAGCACAAAGGCTGGTCAGCCCGCACGGTCGAATTTATGACCACTGTATTTTTAGAACTTGGTTTTATCAAGCTTGAC
GACGGCATCGTTGAAGCAGTAGAAAACCCTGAAAAAAAAGCGTTGACTGCATCGCCGACCTACCAAGCCAAGCAGGAAAA
AGCATGGCTTGAGAATGAATTTGTTTTTGCTTCTTATCAACAGTTAAAAGAATGGTTCCAGGCTGCCATCGAAGGGAGCG
CTGAAACAAAAGAGGAGTCGATCCTAAATGGATTATAA

Domains

Predicted by InterproScan.

DHHA1 domain (DHHA1)

(315-438)

RecJ OB domain (RecJ_OB)

(455-561)

DHH family (DHH)

(82-226)

Single-strand DNA-specific exonuclease, C terminal domain (ssDNA-exonuc_C)

(568-766)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A268P606

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recJ Bacillus subtilis subsp. subtilis str. 168

50.381

100

0.506