Detailed information    

insolico Bioinformatically predicted

Overview

Name   rarA   Type   Machinery gene
Locus tag   ACD269_RS08465 Genome accession   NZ_CP168260
Coordinates   1666195..1667466 (+) Length   423 a.a.
NCBI ID   WP_001113219.1    Uniprot ID   -
Organism   Streptococcus pneumoniae strain FC2     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1661195..1672466
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACD269_RS08430 (ACD269_08430) - 1662260..1662688 (-) 429 WP_050210586.1 NUDIX hydrolase -
  ACD269_RS08435 (ACD269_08435) - 1662690..1663757 (-) 1068 WP_050231311.1 site-2 protease family protein -
  ACD269_RS08440 (ACD269_08440) - 1663776..1664246 (-) 471 WP_050210588.1 DUF3013 family protein -
  ACD269_RS08445 (ACD269_08445) - 1664537..1664989 (-) 453 WP_000961810.1 type II toxin-antitoxin system HicB family antitoxin -
  ACD269_RS08450 (ACD269_08450) - 1665026..1665205 (-) 180 WP_001132281.1 type II toxin-antitoxin system HicA family toxin -
  ACD269_RS08455 (ACD269_08455) - 1665342..1665521 (-) 180 WP_001048906.1 hypothetical protein -
  ACD269_RS08460 (ACD269_08460) - 1665686..1665925 (-) 240 WP_000818078.1 hypothetical protein -
  ACD269_RS08465 (ACD269_08465) rarA 1666195..1667466 (+) 1272 WP_001113219.1 replication-associated recombination protein A Machinery gene
  ACD269_RS08475 (ACD269_08475) - 1668013..1669332 (-) 1320 WP_050210589.1 glycoside hydrolase family 32 protein -
  ACD269_RS08480 (ACD269_08480) - 1669342..1670187 (-) 846 WP_000819519.1 carbohydrate ABC transporter permease -
  ACD269_RS08485 (ACD269_08485) - 1670189..1671091 (-) 903 WP_000032537.1 carbohydrate ABC transporter permease -

Sequence

Protein


Download         Length: 423 a.a.        Molecular weight: 46998.51 Da        Isoelectric Point: 6.2424

>NTDB_id=935249 ACD269_RS08465 WP_001113219.1 1666195..1667466(+) (rarA) [Streptococcus pneumoniae strain FC2]
MPDNLALRMRPKTIDQVIGQEHLVGPGKIIRRMVEANRLSSMILYGPPGIGKTSIASAIAGTTKYAFRTFNATVDSKKRL
QEISEEAKFSGGLVLLLDEIHRLDKTKQDFLLPLLESGLVIMIGATTENPFFSVTPAIRSRVQIFELEPLSNQDVKEALQ
IALSNPERGFDFPIELDEDALDFIATSTNGDLRSAFNSLDLAVLSTPENDKGIRHITLDIMENSLQRSYITMDKDGDGHY
DVLSALQKSIRGSDVDASLHYTARLIEAGDLPSLARRLTVIAYEDIGLANPEAQIHTVTALDAAQKIGFPEARILIANVV
IDLALSPKSNSAYVAMDKALADLKTSGHLPIPRHLRDGHYSGSKELGNAQDYLYPHNYPGNWVKQDYLPEKIRNHHYFQA
EDTGKYERALAQRKEAIDRLRKI

Nucleotide


Download         Length: 1272 bp        

>NTDB_id=935249 ACD269_RS08465 WP_001113219.1 1666195..1667466(+) (rarA) [Streptococcus pneumoniae strain FC2]
ATGCCAGACAATCTCGCGCTTCGCATGCGCCCTAAAACCATCGACCAGGTCATCGGTCAGGAGCATCTGGTCGGACCTGG
AAAAATCATCCGCCGCATGGTGGAAGCCAACCGCCTGTCCTCCATGATTCTATATGGCCCTCCGGGAATCGGCAAAACCA
GTATTGCCTCTGCCATCGCTGGAACGACCAAGTATGCCTTTCGAACTTTCAATGCGACAGTTGATAGTAAAAAGCGACTG
CAAGAAATCTCGGAAGAAGCTAAATTTTCTGGTGGTCTCGTCCTATTGCTAGACGAAATTCATCGACTAGATAAGACCAA
GCAAGACTTCCTCTTGCCTCTCTTGGAAAGTGGACTGGTCATCATGATTGGAGCAACGACTGAAAATCCTTTCTTCTCTG
TCACTCCTGCCATTCGTAGCCGTGTTCAAATTTTCGAGTTGGAACCTCTGTCTAACCAAGACGTCAAAGAGGCCCTGCAG
ATAGCTCTAAGTAACCCTGAACGTGGTTTTGATTTTCCAATAGAACTAGATGAGGATGCGCTGGATTTCATCGCAACCTC
TACAAACGGAGACCTTCGCTCTGCCTTTAACTCACTGGACTTGGCTGTTCTCTCTACCCCTGAGAATGACAAGGGCATTC
GCCACATCACCTTAGACATCATGGAAAATAGTCTTCAGAGAAGCTACATCACTATGGACAAGGATGGAGACGGTCACTAT
GATGTTCTATCTGCCCTGCAAAAGTCTATCCGTGGCTCAGATGTGGATGCCAGTCTCCACTATACTGCCCGCTTGATTGA
GGCTGGGGATCTGCCTAGTCTCGCTCGTCGCTTGACTGTTATCGCCTATGAAGATATCGGCTTAGCCAATCCTGAGGCCC
AGATTCATACCGTGACTGCTCTGGATGCCGCCCAGAAGATTGGGTTCCCAGAAGCCCGCATTCTCATTGCCAATGTCGTG
ATTGATTTGGCCCTTTCTCCAAAATCCAACTCAGCCTATGTAGCTATGGATAAGGCACTTGCTGACCTCAAAACATCAGG
GCACTTGCCTATTCCGCGACACCTACGTGATGGGCACTACAGTGGAAGCAAGGAACTGGGGAATGCCCAAGACTATCTCT
ATCCACACAACTATCCTGGAAATTGGGTCAAGCAAGACTATCTGCCAGAAAAAATTCGTAATCATCACTATTTCCAAGCA
GAAGATACTGGTAAATATGAACGGGCTTTGGCTCAAAGAAAGGAAGCTATCGACCGTTTGCGAAAAATCTGA

Domains

Predicted by InterProScan.

MgsA AAA+ ATPase C terminal (MgsA_C)

(252-416)

AAA C-terminal domain (AAA_assoc_2)

(173-251)

ATPase family associated with various cellular activities (AAA) (AAA)

(42-144)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rarA Bacillus subtilis subsp. subtilis str. 168

57.518

99.054

0.57