Detailed information    

insolico Bioinformatically predicted

Overview

Name   codY   Type   Regulator
Locus tag   V5G22_RS20160 Genome accession   NZ_CP144920
Coordinates   3920082..3920861 (-) Length   259 a.a.
NCBI ID   WP_003181756.1    Uniprot ID   A0A1Y0YKK2
Organism   Bacillus licheniformis strain CP26     
Function   repression of comK (predicted from homology)   
Competence regulation

Genomic Context

Location: 3915082..3925861
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  V5G22_RS20130 (V5G22_20130) fliH 3915123..3915890 (-) 768 WP_009328518.1 flagellar assembly protein FliH -
  V5G22_RS20135 (V5G22_20135) fliG 3915874..3916890 (-) 1017 WP_003181768.1 flagellar motor switch protein FliG -
  V5G22_RS20140 (V5G22_20140) fliF 3916904..3918505 (-) 1602 WP_003181766.1 flagellar basal-body MS-ring/collar protein FliF -
  V5G22_RS20145 (V5G22_20145) fliE 3918556..3918873 (-) 318 WP_003181764.1 flagellar hook-basal body complex protein FliE -
  V5G22_RS20150 (V5G22_20150) flgC 3918887..3919339 (-) 453 WP_009328519.1 flagellar basal body rod protein FlgC -
  V5G22_RS20155 (V5G22_20155) flgB 3919339..3919728 (-) 390 WP_073411160.1 flagellar basal body rod protein FlgB -
  V5G22_RS20160 (V5G22_20160) codY 3920082..3920861 (-) 780 WP_003181756.1 GTP-sensing pleiotropic transcriptional regulator CodY Regulator
  V5G22_RS20165 (V5G22_20165) hslU 3920900..3922312 (-) 1413 WP_255265627.1 HslU--HslV peptidase ATPase subunit -
  V5G22_RS20170 (V5G22_20170) hslV 3922320..3922865 (-) 546 WP_003181752.1 ATP-dependent protease subunit HslV -
  V5G22_RS20175 (V5G22_20175) xerC 3922879..3923793 (-) 915 WP_011197974.1 tyrosine recombinase XerC -
  V5G22_RS20180 (V5G22_20180) trmFO 3923860..3925164 (-) 1305 WP_003181748.1 FADH(2)-oxidizing methylenetetrahydrofolate--tRNA-(uracil(54)-C(5))- methyltransferase TrmFO -

Sequence

Protein


Download         Length: 259 a.a.        Molecular weight: 29073.42 Da        Isoelectric Point: 4.8196

>NTDB_id=935231 V5G22_RS20160 WP_003181756.1 3920082..3920861(-) (codY) [Bacillus licheniformis strain CP26]
MALLQKTRKINAMLQNAAGKPVNFKEMAETLRDVIDSNIFVVSRRGKLLGFSINQQIENDRMKKMLEERQFPEDYTKSLF
NIPETSSNLDINSEYTAFPVENRDLFQAGLTTVVPIIGGGERLGTLILSRLQEKFEDDDLILAEYGATVVGMEILREKAE
EIEEEARSKAVVQMAISSLSYSELEAIEHIFEELDGNEGLLVASKIADRVGITRSVIVNALRKLESAGVIESRSLGMKGT
YIKVLNNKFLMELEKLKSH

Nucleotide


Download         Length: 780 bp        

>NTDB_id=935231 V5G22_RS20160 WP_003181756.1 3920082..3920861(-) (codY) [Bacillus licheniformis strain CP26]
ATGGCTTTATTACAAAAAACAAGAAAGATTAATGCAATGCTGCAAAATGCGGCAGGGAAGCCGGTTAATTTTAAAGAAAT
GGCCGAAACGCTTCGCGATGTGATTGATTCGAACATTTTCGTCGTCAGCCGCAGAGGAAAGCTTCTCGGTTTCTCGATCA
ACCAGCAGATCGAAAATGACCGGATGAAAAAAATGCTTGAAGAGCGCCAGTTTCCTGAAGATTATACAAAAAGCCTGTTC
AACATTCCGGAAACGTCATCTAACCTTGACATCAACAGCGAATACACAGCTTTCCCTGTGGAAAACCGCGATTTGTTCCA
AGCGGGTCTGACCACGGTCGTTCCGATCATCGGAGGAGGCGAAAGACTGGGCACCTTGATTCTGTCCCGCCTTCAGGAGA
AATTCGAGGATGACGATCTGATCCTTGCCGAATATGGCGCCACTGTCGTAGGAATGGAAATTCTCAGAGAGAAAGCGGAA
GAGATCGAAGAGGAAGCGCGCAGCAAAGCGGTCGTTCAAATGGCGATCAGTTCACTATCTTACAGCGAGCTTGAAGCAAT
TGAACATATTTTTGAGGAGCTTGACGGAAATGAAGGCCTGCTTGTCGCTAGTAAAATTGCAGACCGCGTCGGCATCACCC
GCTCGGTCATTGTCAACGCGCTCCGTAAACTTGAAAGCGCCGGTGTCATTGAATCAAGGTCACTAGGGATGAAAGGCACA
TACATCAAAGTGCTGAACAACAAATTTTTGATGGAGTTAGAAAAACTAAAGTCTCATTAA

Domains

Predicted by InterproScan.

CodY helix-turn-helix domain (HTH_CodY)

(198-255)

CodY GAF-like domain (CodY)

(3-178)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A1Y0YKK2

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  codY Bacillus subtilis subsp. subtilis str. 168

94.595

100

0.946
  codY Lactococcus lactis subsp. lactis strain DGCC12653

47.451

98.456

0.467