Detailed information    

insolico Bioinformatically predicted

Overview

Name   recD2   Type   Machinery gene
Locus tag   FTX54_RS06690 Genome accession   NZ_CP144914
Coordinates   1492784..1495045 (+) Length   753 a.a.
NCBI ID   WP_246125571.1    Uniprot ID   -
Organism   Alkalicoccus halolimnae strain BZ-SZ-XJ29     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1487784..1500045
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  FTX54_RS06665 (FTX54_006665) - 1488368..1489015 (+) 648 WP_246125572.1 YitT family protein -
  FTX54_RS06670 (FTX54_006670) - 1488999..1489418 (+) 420 WP_147803002.1 Rrf2 family transcriptional regulator -
  FTX54_RS06675 (FTX54_006675) - 1489433..1490578 (+) 1146 WP_147803001.1 cysteine desulfurase family protein -
  FTX54_RS06680 (FTX54_006680) mnmA 1490594..1491697 (+) 1104 WP_147803000.1 tRNA 2-thiouridine(34) synthase MnmA -
  FTX54_RS06685 (FTX54_006685) - 1492094..1492765 (+) 672 WP_147802999.1 tetratricopeptide repeat protein -
  FTX54_RS06690 (FTX54_006690) recD2 1492784..1495045 (+) 2262 WP_246125571.1 ATP-dependent RecD-like DNA helicase Machinery gene
  FTX54_RS06695 (FTX54_006695) alaS 1495447..1498077 (+) 2631 WP_147802997.1 alanine--tRNA ligase -
  FTX54_RS06700 (FTX54_006700) - 1498163..1498426 (+) 264 WP_147802996.1 IreB family regulatory phosphoprotein -
  FTX54_RS06705 (FTX54_006705) ruvX 1498426..1498842 (+) 417 WP_147802995.1 Holliday junction resolvase RuvX -
  FTX54_RS06710 (FTX54_006710) - 1498862..1499161 (+) 300 WP_147802994.1 DUF1292 domain-containing protein -

Sequence

Protein


Download         Length: 753 a.a.        Molecular weight: 84706.09 Da        Isoelectric Point: 4.8725

>NTDB_id=935107 FTX54_RS06690 WP_246125571.1 1492784..1495045(+) (recD2) [Alkalicoccus halolimnae strain BZ-SZ-XJ29]
MEEEQPYIKGELLHLIYHQEDSLYTVAKLKVVKSSEEMKEKETVVVGLMAKPEKDTTYLFHGKMTDHPRFGKQFKFDTYN
KEMPDTKQGLVLYFSSDRFPGIGRKTAELIVDTFGTEAISLILSNPARLGEVPKLDSEKAEIIHEQLMEDQGIEEVLMKL
YEYGFGLRLAIKIYQTYQTEALQIIENNPYQMVEDVEGVGFIKADQIGRKQGVTGDHPDRLKAAVMFTLYEQCLNEGHVY
AENQYIVKKSCELLEYGGQEKVDPLKIAELVIILGEEEKIIAENNIMYIPSLYYAEKGIAANIKRLMHQEKSTEFPESEL
LKAIGKVEERFQVTYAPSQKTAIETAVSAPLMLLTGGPGTGKTTVIQGVIETFASLNGLSLRKEDYQGKEEPFPFLLAAP
TGRAAKRMTESTGLPASTIHRLLGYKGMGDEAFEKDEDSPLEGRLLILDEMSMVDTWLANQLFRAVPSNMQVLIVGDEDQ
LPSVGPGQVLTDLLEVDQIPTVRLTDIYRQSEHSRIITFSHQVKSGVLPPEVDTSSDDLRFFPCGTDKVLEAVDKICRGA
LAKGYTARDIQVLAPMYRGDAGINRLNLMLQALFNPKGERTKEVIFGESAYRVGDMVLQLVNNPEDNVFNGDRGEIAAIL
TEKETADKQMQIVISFDGTEVVYSKQDLTQITHAYCCSIHKSQGSEFPIVIMPVVKSYYRMLRRKLIYTGITRASQFLLL
CGDWQAVRYAVETDRELLRNTSLVEKLKQNAPE

Nucleotide


Download         Length: 2262 bp        

>NTDB_id=935107 FTX54_RS06690 WP_246125571.1 1492784..1495045(+) (recD2) [Alkalicoccus halolimnae strain BZ-SZ-XJ29]
GTGGAGGAAGAACAGCCGTATATTAAAGGAGAGCTGCTTCACCTGATTTATCATCAGGAAGATTCTCTCTATACTGTGGC
CAAATTAAAAGTAGTGAAATCTTCAGAAGAGATGAAAGAAAAAGAAACGGTGGTCGTCGGCCTCATGGCGAAACCGGAAA
AAGATACGACTTATTTATTCCACGGAAAAATGACCGATCATCCACGGTTTGGAAAGCAGTTTAAATTTGATACATACAAT
AAAGAAATGCCGGATACAAAGCAGGGGCTTGTTCTATATTTTTCCAGCGACCGCTTTCCGGGGATAGGCAGAAAAACAGC
TGAGCTCATCGTGGACACATTCGGTACTGAAGCAATTTCCCTCATACTTTCCAATCCTGCCCGCCTCGGTGAAGTACCGA
AGCTGGATTCAGAAAAAGCAGAAATTATACACGAACAGCTGATGGAAGATCAGGGCATTGAAGAAGTGCTGATGAAGCTG
TATGAATATGGTTTTGGTCTGAGGCTCGCTATAAAGATTTATCAGACGTACCAGACCGAAGCATTGCAGATAATTGAAAA
CAATCCTTATCAAATGGTGGAAGATGTAGAAGGAGTCGGCTTTATAAAAGCAGACCAGATAGGCAGAAAGCAGGGAGTAA
CGGGGGATCATCCCGACCGCCTTAAAGCTGCAGTAATGTTCACATTGTATGAACAGTGTTTGAATGAAGGGCATGTCTAT
GCAGAAAATCAGTATATAGTAAAAAAATCCTGTGAACTGCTTGAATATGGCGGCCAGGAGAAAGTAGACCCGCTTAAAAT
TGCTGAACTCGTTATCATTTTAGGCGAAGAAGAAAAAATTATTGCTGAAAACAACATCATGTATATTCCTTCACTTTATT
ATGCGGAAAAGGGGATAGCTGCAAACATAAAAAGGCTGATGCATCAGGAAAAGAGCACTGAATTTCCGGAATCTGAGCTG
CTTAAAGCAATAGGGAAGGTAGAAGAAAGGTTCCAGGTTACCTATGCCCCTTCTCAGAAAACAGCAATCGAAACCGCAGT
ATCTGCGCCTCTGATGCTGCTGACAGGAGGGCCGGGAACGGGAAAAACGACGGTTATTCAAGGAGTAATCGAAACTTTTG
CGTCGTTGAACGGCCTTTCTCTGCGCAAAGAAGACTATCAGGGAAAGGAAGAACCATTCCCCTTCCTGCTGGCAGCTCCT
ACGGGCCGCGCTGCGAAAAGAATGACAGAATCAACCGGGCTGCCGGCTTCTACGATTCATCGGCTGCTTGGTTATAAAGG
GATGGGCGATGAAGCTTTCGAAAAAGATGAAGATTCACCGCTCGAGGGGCGTCTGCTCATTCTGGATGAAATGTCCATGG
TGGACACGTGGCTTGCAAATCAGCTGTTTCGTGCGGTCCCTTCCAATATGCAGGTTCTTATTGTAGGAGACGAAGATCAG
CTGCCCTCAGTCGGACCAGGACAGGTGCTGACAGATCTTCTTGAGGTGGACCAGATTCCGACTGTAAGACTTACAGACAT
TTACCGGCAGTCGGAGCATTCAAGAATTATTACCTTTTCCCACCAGGTGAAAAGCGGCGTTCTGCCTCCGGAAGTAGATA
CTTCCAGCGATGATCTTCGTTTCTTTCCGTGCGGGACTGATAAGGTTTTGGAAGCGGTCGATAAAATCTGCAGAGGAGCG
CTGGCTAAAGGCTACACAGCTCGGGATATTCAGGTTCTTGCCCCCATGTACCGTGGAGACGCAGGTATTAATCGTCTCAA
CTTAATGCTCCAGGCTCTGTTTAATCCAAAAGGAGAAAGAACAAAAGAAGTAATTTTTGGAGAGTCCGCTTACCGGGTAG
GTGATATGGTACTTCAGCTTGTGAATAATCCGGAGGATAATGTTTTTAACGGAGACCGTGGAGAGATAGCTGCTATACTG
ACGGAAAAAGAAACGGCAGATAAACAGATGCAGATTGTAATTTCTTTTGATGGGACAGAAGTTGTTTATTCCAAGCAGGA
CTTAACGCAGATCACCCATGCTTACTGCTGTTCTATCCACAAATCTCAGGGAAGTGAATTTCCTATCGTTATTATGCCTG
TCGTGAAAAGCTATTACCGCATGCTTCGAAGAAAACTCATTTATACAGGAATCACTAGAGCCAGTCAGTTTCTGCTTTTA
TGCGGAGACTGGCAGGCGGTGAGATATGCGGTGGAGACGGACAGGGAGCTTTTAAGAAACACTTCCCTCGTAGAAAAATT
AAAACAAAACGCACCTGAATAA

Domains

Predicted by InterproScan.

ATP-dependent RecD-like DNA helicase SH3 domain (SH3_13)

(586-653)

Helix-hairpin-helix containing domain (HHH_RecD2)

(150-240)

UvrD-like helicase C-terminal domain (UvrD_C_2)

(673-721)

AAA domain (AAA_30)

(335-529)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recD2 Bacillus subtilis subsp. subtilis str. 168

52.807

99.336

0.525