Detailed information    

insolico Bioinformatically predicted

Overview

Name   recJ   Type   Machinery gene
Locus tag   FTX54_RS06625 Genome accession   NZ_CP144914
Coordinates   1477121..1479463 (+) Length   780 a.a.
NCBI ID   WP_147803009.1    Uniprot ID   A0A5C7FK49
Organism   Alkalicoccus halolimnae strain BZ-SZ-XJ29     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1472121..1484463
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  FTX54_RS06605 (FTX54_006605) secD 1473436..1474683 (+) 1248 WP_246125577.1 protein translocase subunit SecD -
  FTX54_RS06610 (FTX54_006610) secF 1474673..1475614 (+) 942 WP_147803012.1 protein translocase subunit SecF -
  FTX54_RS06615 (FTX54_006615) - 1475780..1476688 (+) 909 WP_147803011.1 cation diffusion facilitator family transporter -
  FTX54_RS06620 (FTX54_006620) - 1476685..1477014 (+) 330 WP_147803010.1 lipopolysaccharide assembly protein LapA domain-containing protein -
  FTX54_RS06625 (FTX54_006625) recJ 1477121..1479463 (+) 2343 WP_147803009.1 single-stranded-DNA-specific exonuclease RecJ Machinery gene
  FTX54_RS06630 (FTX54_006630) - 1479485..1479997 (+) 513 WP_147803008.1 adenine phosphoribosyltransferase -
  FTX54_RS06635 (FTX54_006635) - 1480202..1482382 (+) 2181 WP_147803007.1 bifunctional (p)ppGpp synthetase/guanosine-3',5'-bis(diphosphate) 3'-pyrophosphohydrolase -
  FTX54_RS06640 (FTX54_006640) dtd 1482402..1482845 (+) 444 WP_147803006.1 D-aminoacyl-tRNA deacylase -

Sequence

Protein


Download         Length: 780 a.a.        Molecular weight: 86688.12 Da        Isoelectric Point: 5.2820

>NTDB_id=935106 FTX54_RS06625 WP_147803009.1 1477121..1479463(+) (recJ) [Alkalicoccus halolimnae strain BZ-SZ-XJ29]
MLHANSEWIISGTEAAAVDKLRKSTGLSALASKFLVQRKITEESEINKFLRADEKELHDPLLMKDMEKAAVRIHKAINQK
ENILVFGDYDADGVTSTSLLYSVLTEMGAQAGFYVPNRFTEGYGPNEAAFRYAAEEGVHLIVTVDTGISAVHEAEVAKEL
GIDLIITDHHEPPPQLPDAYAVINPKQENCSYPFKELAGVGVAFKLSHALTGKIPTGFYDLAAVGTIADLVPLQGENRIL
AVHGLKALRKDLRPGLKALLEKAGADQADIDEETVGFLIGPRLNAAGRLDSADPAVALLMSRDPEEAEELALMVDDLNKE
RQSIVKEITAEAEELVEAQGIPPVLVVAKEGWNPGVIGIVASRLVEKYYRPAIVLSLIPEENKAKGSARSIAGFDMFQSL
STMREILPHFGGHPMAAGLTMADTDVENLRDRLISLAERNISEEDWKRKLYVDLPVKVEEISVKTIQDLSQMAPFGIGNP
APKVMLEKTTVEQAKKIGAGQDHLKLTLTDESHSNALDAIAFRMGAKHDLISPLAKLSAVGKLSINEWNGNVKPQLIVED
MKVEEWQLFDFRGNKRYGSKESGERTILIFQESTGEPSLPSSWPVLRVDRESMESADLTNVNHAVLYDVPDTMEHLEFVM
KKLNSTERIDAVFVHSEDYFFTSLPSRDQFKWFYGFMQKRKMFDMNKHLTDLAKHKGWSENTVKFICTVFFELGFVKIND
GIVVLVEEPGKKELTDSPAYQKHVQKSRIQQELCYSTFRSLKKQLDAMRKTAETATIQSS

Nucleotide


Download         Length: 2343 bp        

>NTDB_id=935106 FTX54_RS06625 WP_147803009.1 1477121..1479463(+) (recJ) [Alkalicoccus halolimnae strain BZ-SZ-XJ29]
ATGCTTCACGCAAATTCTGAATGGATTATTTCCGGAACAGAAGCAGCGGCTGTAGATAAGCTGCGGAAAAGTACAGGACT
GTCTGCGCTGGCTTCTAAGTTTCTTGTCCAGAGAAAGATTACAGAAGAATCAGAAATTAACAAGTTTTTAAGAGCTGATG
AAAAAGAGCTTCATGATCCTTTACTTATGAAAGATATGGAAAAAGCCGCAGTAAGAATTCATAAGGCTATAAATCAAAAG
GAAAATATCCTTGTTTTTGGAGACTATGATGCTGACGGAGTAACAAGCACATCGCTTCTCTACAGCGTTTTAACGGAGAT
GGGGGCACAGGCAGGTTTTTATGTTCCCAACCGATTTACGGAAGGCTATGGGCCGAATGAAGCAGCTTTCAGGTATGCAG
CGGAAGAAGGAGTTCATTTAATTGTCACAGTTGATACAGGGATATCAGCCGTTCACGAAGCTGAAGTAGCCAAGGAACTC
GGTATTGATTTAATTATTACAGATCATCATGAGCCTCCTCCGCAGCTGCCCGATGCCTATGCTGTAATAAACCCGAAGCA
GGAAAACTGCAGTTACCCTTTTAAAGAACTGGCCGGAGTCGGGGTAGCTTTTAAATTAAGTCATGCTTTAACTGGGAAAA
TTCCAACGGGCTTTTATGATTTGGCGGCTGTTGGTACAATTGCCGATCTTGTGCCGCTTCAAGGAGAGAACCGGATCCTT
GCGGTGCATGGGTTAAAAGCTTTAAGAAAAGACCTCCGCCCTGGATTAAAGGCACTTCTGGAAAAAGCAGGAGCGGACCA
GGCTGATATAGATGAGGAAACAGTCGGTTTTTTGATCGGGCCGCGTCTGAATGCTGCGGGGCGTCTCGACAGCGCTGATC
CAGCTGTAGCTCTGCTTATGAGCAGAGATCCGGAAGAAGCAGAAGAACTTGCTTTAATGGTTGATGATTTAAACAAGGAA
CGCCAGAGTATAGTAAAAGAAATCACAGCAGAGGCAGAAGAACTCGTAGAGGCGCAGGGAATTCCTCCGGTTCTGGTTGT
AGCAAAAGAAGGCTGGAATCCCGGAGTCATTGGAATTGTCGCAAGCAGACTCGTCGAAAAATATTATCGTCCGGCTATCG
TATTAAGTTTGATACCGGAAGAAAATAAAGCTAAAGGATCAGCACGCAGTATAGCGGGATTTGATATGTTTCAGTCCCTC
TCAACGATGAGGGAAATTCTTCCGCATTTTGGCGGCCACCCTATGGCCGCAGGCCTTACCATGGCCGATACTGATGTGGA
AAACCTGCGTGATAGACTCATTTCTCTCGCGGAGCGGAACATTTCAGAGGAGGACTGGAAGAGAAAGCTGTACGTCGATC
TGCCAGTCAAAGTGGAAGAGATCTCAGTTAAGACCATTCAGGACCTTTCCCAAATGGCTCCTTTCGGCATTGGCAACCCT
GCTCCGAAGGTGATGCTGGAGAAAACTACGGTGGAACAGGCTAAAAAAATTGGAGCCGGACAGGATCACTTGAAACTGAC
ACTGACAGATGAAAGTCATTCAAATGCACTGGATGCTATTGCTTTTAGAATGGGGGCTAAGCATGATCTGATTTCCCCCC
TTGCAAAGCTTTCTGCCGTAGGAAAGCTTTCCATCAATGAGTGGAACGGAAATGTTAAACCGCAGCTGATAGTTGAAGAT
ATGAAAGTGGAGGAATGGCAGCTTTTTGATTTCCGCGGCAACAAACGCTACGGTTCCAAAGAGTCCGGAGAAAGAACCAT
CCTCATATTTCAGGAAAGCACCGGGGAACCATCTCTTCCATCTTCCTGGCCGGTTCTGCGGGTGGACAGGGAATCAATGG
AGTCCGCTGATTTAACAAATGTAAATCATGCTGTTTTATATGATGTTCCGGATACGATGGAGCACCTGGAATTTGTTATG
AAAAAACTGAACAGTACAGAACGAATCGATGCAGTATTTGTTCACAGTGAGGATTATTTTTTTACTTCCCTTCCGTCCCG
TGACCAGTTCAAATGGTTCTATGGTTTTATGCAGAAACGTAAAATGTTTGATATGAACAAACATTTAACAGATCTGGCAA
AACATAAAGGATGGAGTGAAAATACGGTGAAATTTATCTGTACCGTGTTTTTCGAGCTGGGATTTGTTAAAATAAATGAT
GGTATAGTTGTACTGGTAGAAGAGCCGGGTAAAAAAGAGCTGACTGATTCGCCAGCCTACCAGAAGCATGTCCAGAAAAG
CAGAATCCAGCAGGAACTATGCTATTCTACTTTTCGATCTTTAAAAAAACAGCTGGATGCTATGAGGAAGACGGCTGAAA
CTGCTACTATACAGAGCAGCTAA

Domains

Predicted by InterproScan.

Single-strand DNA-specific exonuclease, C terminal domain (ssDNA-exonuc_C)

(567-763)

RecJ OB domain (RecJ_OB)

(452-560)

DHH family (DHH)

(82-226)

DHHA1 domain (DHHA1)

(315-435)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A5C7FK49

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recJ Bacillus subtilis subsp. subtilis str. 168

48.59

100

0.486