Detailed information    

insolico Bioinformatically predicted

Overview

Name   sigH   Type   Regulator
Locus tag   V4U93_RS09135 Genome accession   NZ_CP144755
Coordinates   1799239..1799799 (-) Length   186 a.a.
NCBI ID   WP_016265666.1    Uniprot ID   A0A9N7J0X6
Organism   Latilactobacillus sakei subsp. sakei strain DCF0720     
Function   promote expression of competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 1794239..1804799
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  V4U93_RS09105 (V4U93_09105) rplA 1795474..1796163 (-) 690 WP_101378060.1 50S ribosomal protein L1 -
  V4U93_RS09110 (V4U93_09110) rplK 1796262..1796687 (-) 426 WP_004270859.1 50S ribosomal protein L11 -
  V4U93_RS09115 (V4U93_09115) - 1796813..1797676 (-) 864 WP_338453699.1 alpha/beta fold hydrolase -
  V4U93_RS09120 (V4U93_09120) nusG 1798129..1798677 (-) 549 WP_011375364.1 transcription termination/antitermination protein NusG -
  V4U93_RS09125 (V4U93_09125) secE 1798775..1798948 (-) 174 WP_016265665.1 preprotein translocase subunit SecE -
  V4U93_RS09130 (V4U93_09130) rpmG 1798964..1799113 (-) 150 WP_011375366.1 50S ribosomal protein L33 -
  V4U93_RS09135 (V4U93_09135) sigH 1799239..1799799 (-) 561 WP_016265666.1 sigma-70 family RNA polymerase sigma factor Regulator
  V4U93_RS09140 (V4U93_09140) - 1799877..1800410 (-) 534 WP_016265667.1 NYN domain-containing protein -
  V4U93_RS09145 (V4U93_09145) rlmB 1800414..1801301 (-) 888 WP_011375369.1 23S rRNA (guanosine(2251)-2'-O)-methyltransferase RlmB -
  V4U93_RS09150 (V4U93_09150) - 1801288..1801695 (-) 408 WP_004265086.1 Mini-ribonuclease 3 -
  V4U93_RS09155 (V4U93_09155) cysS 1801692..1803098 (-) 1407 WP_338453701.1 cysteine--tRNA ligase -

Sequence

Protein


Download         Length: 186 a.a.        Molecular weight: 22072.18 Da        Isoelectric Point: 6.6722

>NTDB_id=934738 V4U93_RS09135 WP_016265666.1 1799239..1799799(-) (sigH) [Latilactobacillus sakei subsp. sakei strain DCF0720]
MEQTKRDELLIAAVAQNDSQALDVLFKAYLPMVYHTVAPYYIRLFDEDDWLQEARIVCYETCQCYDCQKGKSFGSFYKLR
FKNHILNLLRRELAQKRRGDRQAVLIAERPEHDAISEDTMTYYQSQFELRCYLETLSPFELVSFRVLTGQLSIDEACCQL
DCTIDQLKRGQSRCQTKLKRYYQENR

Nucleotide


Download         Length: 561 bp        

>NTDB_id=934738 V4U93_RS09135 WP_016265666.1 1799239..1799799(-) (sigH) [Latilactobacillus sakei subsp. sakei strain DCF0720]
ATGGAACAAACAAAGCGCGACGAACTGCTGATTGCAGCAGTGGCTCAGAATGATTCACAAGCACTAGATGTATTATTCAA
GGCGTATTTGCCGATGGTGTATCACACCGTGGCGCCATATTATATCCGGTTATTCGATGAAGACGATTGGTTACAAGAAG
CCCGGATTGTTTGTTACGAAACTTGCCAATGTTACGATTGTCAAAAAGGCAAAAGTTTTGGGAGTTTCTATAAATTACGG
TTTAAAAACCACATTTTAAATTTACTACGACGAGAACTCGCACAAAAACGGCGAGGTGATCGTCAGGCAGTATTGATTGC
GGAGCGGCCGGAACACGACGCGATTTCAGAAGATACGATGACTTACTATCAATCGCAGTTTGAATTGAGATGTTATCTTG
AAACGCTGTCGCCTTTTGAATTAGTGTCGTTTCGGGTGCTGACCGGGCAGCTTTCAATTGATGAAGCTTGTTGCCAACTC
GATTGTACGATTGACCAGTTGAAACGAGGCCAATCAAGGTGCCAGACTAAGTTAAAACGGTATTATCAAGAGAATCGTTA
A

Domains

Predicted by InterproScan.

Sigma-70 region 2 (Sigma70_r2)

(25-92)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sigH Latilactobacillus sakei subsp. sakei 23K

97.849

100

0.978