Detailed information    

insolico Bioinformatically predicted

Overview

Name   comEA   Type   Machinery gene
Locus tag   V4U93_RS05820 Genome accession   NZ_CP144755
Coordinates   1165649..1166356 (-) Length   235 a.a.
NCBI ID   WP_226474265.1    Uniprot ID   -
Organism   Latilactobacillus sakei subsp. sakei strain DCF0720     
Function   dsDNA binding to the cell surface (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1160649..1171356
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  V4U93_RS05795 (V4U93_05795) rpsO 1160943..1161212 (-) 270 WP_011374766.1 30S ribosomal protein S15 -
  V4U93_RS05800 (V4U93_05800) rpsT 1161491..1161745 (+) 255 WP_011374767.1 30S ribosomal protein S20 -
  V4U93_RS05805 (V4U93_05805) holA 1161814..1162842 (-) 1029 WP_061826985.1 DNA polymerase III subunit delta -
  V4U93_RS05810 (V4U93_05810) comEC 1162839..1164905 (-) 2067 WP_226474266.1 DNA internalization-related competence protein ComEC/Rec2 Machinery gene
  V4U93_RS05815 (V4U93_05815) - 1165103..1165591 (-) 489 WP_011374770.1 ComE operon protein 2 -
  V4U93_RS05820 (V4U93_05820) comEA 1165649..1166356 (-) 708 WP_226474265.1 helix-hairpin-helix domain-containing protein Machinery gene
  V4U93_RS05825 (V4U93_05825) - 1166430..1167476 (-) 1047 WP_061826983.1 SepM family pheromone-processing serine protease -
  V4U93_RS05830 (V4U93_05830) coaD 1167478..1167975 (-) 498 WP_061826982.1 pantetheine-phosphate adenylyltransferase -
  V4U93_RS05835 (V4U93_05835) rsmD 1167988..1168542 (-) 555 WP_011374774.1 16S rRNA (guanine(966)-N(2))-methyltransferase RsmD -
  V4U93_RS05840 (V4U93_05840) - 1168547..1168837 (-) 291 WP_011374775.1 YlbG family protein -
  V4U93_RS05845 (V4U93_05845) - 1168861..1169949 (-) 1089 WP_061826981.1 CAP-associated domain-containing protein -
  V4U93_RS05850 (V4U93_05850) - 1169960..1171147 (-) 1188 WP_011374777.1 FtsW/RodA/SpoVE family cell cycle protein -

Sequence

Protein


Download         Length: 235 a.a.        Molecular weight: 26122.75 Da        Isoelectric Point: 9.7683

>NTDB_id=934724 V4U93_RS05820 WP_226474265.1 1165649..1166356(-) (comEA) [Latilactobacillus sakei subsp. sakei strain DCF0720]
MMWQDYWQRYRRFWWVPCLVLLGIITGGFYWHQTQQKQKVTHNEQLLATSASKIKPATKKTHQAATKKKGGFVDIKGAVA
YPGIYPITVSETRLFEVLKNAGGPTDAADTKRLNLAQKLTDQLIIYIPKKGEVVTDQELIQAPQQIATTSERTPEQASTG
TSANASSASDTAKIDLNQADSTQLQTLNGIGPKKAEQIIAYRDEQGKFKQIEDLQKVGGIGPKTFEQLQSQICVN

Nucleotide


Download         Length: 708 bp        

>NTDB_id=934724 V4U93_RS05820 WP_226474265.1 1165649..1166356(-) (comEA) [Latilactobacillus sakei subsp. sakei strain DCF0720]
ATGATGTGGCAAGATTATTGGCAGCGATATCGGCGTTTTTGGTGGGTGCCTTGCTTAGTGCTATTGGGGATCATCACGGG
TGGCTTTTATTGGCATCAAACGCAACAAAAACAAAAAGTAACGCATAATGAGCAACTGCTAGCAACCAGTGCGTCTAAAA
TAAAACCTGCTACTAAGAAAACACACCAAGCGGCAACCAAGAAAAAAGGCGGTTTTGTCGATATAAAAGGTGCTGTGGCT
TATCCGGGAATTTATCCGATCACAGTCTCTGAAACGCGCTTATTTGAGGTGCTCAAAAATGCAGGTGGTCCGACTGATGC
GGCTGATACCAAGCGGCTTAATTTAGCCCAAAAATTAACCGATCAACTGATTATTTATATTCCGAAAAAAGGAGAGGTGG
TTACTGATCAAGAACTCATTCAAGCGCCACAACAAATTGCAACGACCAGTGAGCGTACGCCAGAACAAGCATCAACTGGG
ACAAGTGCGAATGCATCGAGCGCGAGTGACACTGCTAAAATCGATTTGAATCAGGCTGATAGTACGCAGCTTCAGACCCT
CAATGGCATTGGCCCCAAGAAAGCTGAACAAATAATTGCTTATCGTGATGAACAAGGAAAATTTAAACAGATTGAAGATC
TACAAAAAGTCGGCGGGATTGGTCCGAAGACGTTTGAACAATTGCAATCACAAATTTGTGTGAATTAG

Domains

Predicted by InterproScan.

SLBB domain (SLBB)

(73-124)

Helix-hairpin-helix motif (HHH_3)

(172-233)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comEA Latilactobacillus sakei subsp. sakei 23K

97.021

100

0.97