Detailed information    

insolico Bioinformatically predicted

Overview

Name   sxy/tfoX   Type   Regulator
Locus tag   VXE04_RS08180 Genome accession   NZ_CP144716
Coordinates   1727752..1728378 (+) Length   208 a.a.
NCBI ID   WP_023299743.1    Uniprot ID   A0A9X7L0J6
Organism   Enterobacter hormaechei strain B19446     
Function   positive regulator of competence gene (predicted from homology)   
Competence regulation

Genomic Context

Location: 1722752..1733378
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  VXE04_RS08160 (VXE04_08160) - 1723151..1724911 (-) 1761 WP_063255755.1 Lon protease family protein -
  VXE04_RS08165 (VXE04_08165) matP 1725098..1725550 (+) 453 WP_006809347.1 macrodomain Ter protein MatP -
  VXE04_RS08170 (VXE04_08170) ompA 1725616..1726668 (-) 1053 WP_017384806.1 porin OmpA -
  VXE04_RS08175 (VXE04_08175) sulA 1727025..1727534 (-) 510 WP_032610196.1 SOS-induced cell division inhibitor SulA -
  VXE04_RS08180 (VXE04_08180) sxy/tfoX 1727752..1728378 (+) 627 WP_023299743.1 TfoX/Sxy family DNA transformation protein Regulator
  VXE04_RS08185 (VXE04_08185) yccS 1728335..1730497 (-) 2163 WP_023299744.1 YccS family putative transporter -
  VXE04_RS08190 (VXE04_08190) - 1730516..1730962 (-) 447 WP_023299745.1 YccF domain-containing protein -
  VXE04_RS08195 (VXE04_08195) helD 1731085..1733139 (+) 2055 WP_063149027.1 DNA helicase IV -

Sequence

Protein


Download         Length: 208 a.a.        Molecular weight: 23988.54 Da        Isoelectric Point: 9.4592

>NTDB_id=934539 VXE04_RS08180 WP_023299743.1 1727752..1728378(+) (sxy/tfoX) [Enterobacter hormaechei strain B19446]
MKKISYDRIYQSQEYLSPLGEIHHRALFGGYTLAVDEAVFAMVSDGELYLRACEQSAKYCVKNASSFLTLMKRGRPVLLN
YYRVDEGLWQNREKLLQLSSFALDAARKERYQRHQRNRLKDLPNLTFQIEVLLMEAGITNEETLRQLGAKTSWLKMRSKN
KALSIRVLFALEGAIEGLHEAALPADIRRELTEWFNALPESQGHHSAR

Nucleotide


Download         Length: 627 bp        

>NTDB_id=934539 VXE04_RS08180 WP_023299743.1 1727752..1728378(+) (sxy/tfoX) [Enterobacter hormaechei strain B19446]
ATGAAAAAGATATCTTATGATCGGATTTATCAATCTCAAGAATACCTCTCTCCGCTGGGCGAAATTCATCATCGCGCCCT
GTTTGGCGGTTATACCCTGGCCGTGGATGAAGCGGTGTTCGCGATGGTGTCTGACGGTGAGCTTTACCTTCGCGCCTGTG
AGCAAAGTGCAAAATACTGTGTAAAAAACGCCTCTTCTTTTCTGACCCTGATGAAACGAGGACGTCCTGTGCTGCTTAAT
TACTACCGTGTGGATGAAGGTCTGTGGCAAAACAGGGAAAAACTGCTTCAGCTCTCCTCGTTTGCGCTCGATGCCGCCAG
GAAAGAGCGCTACCAGCGCCATCAGCGTAACCGGCTTAAAGATCTGCCGAACCTGACCTTTCAGATTGAGGTCCTGCTTA
TGGAGGCGGGCATTACTAATGAAGAGACGCTACGACAGTTGGGGGCGAAGACGAGCTGGCTGAAAATGCGCTCTAAGAAT
AAAGCGCTGAGTATCCGGGTATTGTTCGCGCTTGAAGGCGCGATTGAAGGGTTACATGAAGCGGCACTCCCGGCGGATAT
TCGCCGGGAGCTTACGGAGTGGTTTAATGCGCTGCCTGAGTCGCAGGGCCATCATTCCGCCAGGTAG

Domains

Predicted by InterproScan.

TfoX C-terminal domain (TfoX_C)

(116-194)

TfoX N-terminal domain (TfoX_N)

(14-106)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sxy/tfoX Escherichia coli BW25113 strain K-12

58.911

97.115

0.572