Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilA/pilA4   Type   Machinery gene
Locus tag   V4942_RS04390 Genome accession   NZ_CP144687
Coordinates   835097..835492 (+) Length   131 a.a.
NCBI ID   WP_011173287.1    Uniprot ID   -
Organism   Thermus thermophilus strain TTHB27_delta_cmr4     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 830097..840492
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  V4942_RS04365 (V4942_04365) - 830270..831250 (-) 981 WP_011173282.1 YpdA family putative bacillithiol disulfide reductase -
  V4942_RS04370 (V4942_04370) pilA/pilA1 831408..831878 (+) 471 WP_011173283.1 GspH/FimT family protein Machinery gene
  V4942_RS04375 (V4942_04375) pilA/pilA2 831912..832493 (+) 582 WP_011173284.1 type II secretion system protein Machinery gene
  V4942_RS04380 (V4942_04380) pilA/pilA3 832490..833191 (+) 702 WP_011173285.1 prepilin-type N-terminal cleavage/methylation domain-containing protein Machinery gene
  V4942_RS04385 (V4942_04385) comZ 833202..834866 (+) 1665 WP_011173286.1 pilus assembly PilX N-terminal domain-containing protein Machinery gene
  V4942_RS04390 (V4942_04390) pilA/pilA4 835097..835492 (+) 396 WP_011173287.1 type IV wide pilus major component PilA4 Machinery gene
  V4942_RS04395 (V4942_04395) - 835549..836841 (-) 1293 WP_143591263.1 hypothetical protein -
  V4942_RS04400 (V4942_04400) - 837098..837610 (+) 513 WP_011173288.1 hypothetical protein -
  V4942_RS04405 (V4942_04405) - 837686..838228 (+) 543 WP_011173289.1 Uma2 family endonuclease -
  V4942_RS04410 (V4942_04410) - 838266..838466 (+) 201 WP_011173290.1 DUF2281 domain-containing protein -
  V4942_RS04415 (V4942_04415) - 838565..839122 (-) 558 WP_011173291.1 Uma2 family endonuclease -
  V4942_RS04420 (V4942_04420) - 839145..839801 (-) 657 WP_011173292.1 chromosome segregation protein ScpA -

Sequence

Protein


Download         Length: 131 a.a.        Molecular weight: 13901.00 Da        Isoelectric Point: 8.4696

>NTDB_id=934447 V4942_RS04390 WP_011173287.1 835097..835492(+) (pilA/pilA4) [Thermus thermophilus strain TTHB27_delta_cmr4]
MRNAKGFTLIELLIVIAIIAILAAVLIPNLLAARKRANDTVVTAYLNDAVKFQEMYQIDNNSYTSNQAALISLGLKSTPA
NVTFSIVSASANSYCMIAGHSGGTVWFAATPDKGVYKTNTAVTSSQPESCP

Nucleotide


Download         Length: 396 bp        

>NTDB_id=934447 V4942_RS04390 WP_011173287.1 835097..835492(+) (pilA/pilA4) [Thermus thermophilus strain TTHB27_delta_cmr4]
ATGCGGAACGCGAAAGGCTTCACCCTGATTGAGCTTCTGATCGTCATCGCCATCATCGCCATCCTGGCGGCGGTGCTGAT
CCCGAACCTTCTGGCTGCACGGAAGAGGGCTAACGATACGGTGGTTACAGCTTACCTGAACGACGCGGTGAAGTTCCAGG
AGATGTACCAGATCGACAACAACTCCTACACCAGCAACCAGGCTGCGCTGATTTCCCTAGGGCTGAAATCCACCCCAGCC
AACGTGACGTTCAGTATCGTTAGCGCTTCTGCCAATAGCTACTGCATGATCGCAGGCCACAGCGGGGGCACCGTCTGGTT
CGCCGCCACTCCGGATAAAGGGGTGTACAAGACGAATACGGCCGTTACTTCTTCTCAACCTGAAAGCTGCCCATAA

Domains

Predicted by InterproScan.

Prokaryotic N-terminal methylation motif (N_methyl)

(1-26)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilA/pilA4 Thermus thermophilus HB27

100

100

1