Detailed information    

insolico Bioinformatically predicted

Overview

Name   codY   Type   Regulator
Locus tag   ACCK19_RS06725 Genome accession   NZ_CP168091
Coordinates   1345617..1346390 (+) Length   257 a.a.
NCBI ID   WP_000055335.1    Uniprot ID   -
Organism   Staphylococcus aureus strain CUBIST-16     
Function   repression of comK (predicted from homology)   
Competence regulation

Genomic Context

Location: 1340617..1351390
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACCK19_RS06705 (ACCK19_06705) trmFO 1340961..1342268 (+) 1308 WP_000195254.1 methylenetetrahydrofolate--tRNA-(uracil(54)- C(5))-methyltransferase (FADH(2)-oxidizing) TrmFO -
  ACCK19_RS06710 (ACCK19_06710) xerC 1342685..1343581 (+) 897 WP_001015597.1 tyrosine recombinase XerC -
  ACCK19_RS06715 (ACCK19_06715) hslV 1343578..1344123 (+) 546 WP_000072681.1 ATP-dependent protease subunit HslV -
  ACCK19_RS06720 (ACCK19_06720) hslU 1344189..1345592 (+) 1404 WP_000379054.1 ATP-dependent protease ATPase subunit HslU -
  ACCK19_RS06725 (ACCK19_06725) codY 1345617..1346390 (+) 774 WP_000055335.1 GTP-sensing pleiotropic transcriptional regulator CodY Regulator
  ACCK19_RS06730 (ACCK19_06730) - 1346441..1346533 (+) 93 WP_001790530.1 hypothetical protein -
  ACCK19_RS06735 (ACCK19_06735) rpsB 1346732..1347499 (+) 768 WP_000268484.1 30S ribosomal protein S2 -
  ACCK19_RS06740 (ACCK19_06740) - 1347533..1347646 (+) 114 WP_001789890.1 hypothetical protein -
  ACCK19_RS06745 (ACCK19_06745) tsf 1347681..1348562 (+) 882 WP_000201387.1 translation elongation factor Ts -
  ACCK19_RS06750 (ACCK19_06750) pyrH 1348699..1349421 (+) 723 WP_000057330.1 UMP kinase -
  ACCK19_RS06755 (ACCK19_06755) frr 1349440..1349994 (+) 555 WP_001280006.1 ribosome recycling factor -
  ACCK19_RS06760 (ACCK19_06760) - 1350367..1351137 (+) 771 WP_000473705.1 isoprenyl transferase -

Sequence

Protein


Download         Length: 257 a.a.        Molecular weight: 28755.13 Da        Isoelectric Point: 6.0680

>NTDB_id=934428 ACCK19_RS06725 WP_000055335.1 1345617..1346390(+) (codY) [Staphylococcus aureus strain CUBIST-16]
MSLLSKTRELNTLLQKHKGIAVDFKDVAQTISSVTVTNVFIVSRRGKILGSSLNELLKSQRIIQMLEERHIPSEYTERLM
EVKQTESNIDIDNVLTVFPPENRELFIDSRTTIFPILGGGERIGTLVLGRVHDDFNENDLVLGEYAATVIGMEILREKHS
EVEKEARDKAAITMAINSLSYSEKEAIEHIFEELGGTEGLLIASKVADRVGITRSVIVNALRKLESAGVIESRSLGMKGT
FIKVKKEKFLDELEKSK

Nucleotide


Download         Length: 774 bp        

>NTDB_id=934428 ACCK19_RS06725 WP_000055335.1 1345617..1346390(+) (codY) [Staphylococcus aureus strain CUBIST-16]
ATGAGCTTATTATCTAAAACGAGAGAGTTAAACACGTTACTTCAAAAACACAAAGGTATTGCGGTTGATTTTAAAGATGT
AGCACAAACGATTAGTAGCGTAACTGTAACAAATGTATTTATTGTATCGCGTCGAGGTAAAATTTTAGGATCGAGTCTAA
ATGAATTATTAAAAAGTCAAAGAATTATTCAAATGTTGGAAGAAAGACATATTCCAAGTGAATATACAGAACGATTAATG
GAAGTTAAACAAACAGAATCAAATATTGATATCGACAATGTATTAACAGTATTCCCACCTGAAAACAGAGAATTATTCAT
AGATAGTCGTACAACTATCTTCCCAATTTTAGGTGGAGGGGAAAGAATAGGTACATTAGTACTTGGTCGAGTACATGATG
ATTTTAATGAAAATGATTTGGTACTAGGTGAATATGCTGCTACAGTTATTGGTATGGAAATCTTACGTGAGAAGCATAGT
GAAGTAGAAAAAGAAGCGCGCGATAAAGCTGCTATTACAATGGCAATTAATTCATTATCTTATTCTGAAAAAGAAGCGAT
TGAACATATCTTTGAAGAACTTGGCGGTACGGAAGGCCTATTAATCGCATCAAAAGTTGCAGATAGAGTTGGTATTACTA
GATCTGTAATTGTAAATGCACTACGTAAATTAGAAAGTGCTGGTGTAATTGAATCACGTTCTTTAGGAATGAAAGGTACT
TTCATTAAAGTTAAAAAAGAAAAATTCTTAGATGAATTAGAAAAAAGTAAATAA

Domains

Predicted by InterProScan.

CodY helix-turn-helix domain (HTH_CodY)

(198-255)

CodY GAF-like domain (CodY)

(2-178)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  codY Bacillus subtilis subsp. subtilis str. 168

63.813

100

0.638
  codY Lactococcus lactis subsp. lactis strain DGCC12653

42.412

100

0.424