Detailed information    

insolico Bioinformatically predicted

Overview

Name   comEA   Type   Machinery gene
Locus tag   V4943_RS08210 Genome accession   NZ_CP144685
Coordinates   1517585..1517893 (+) Length   102 a.a.
NCBI ID   WP_024119555.1    Uniprot ID   -
Organism   Thermus thermophilus strain HB27_delta_csm3     
Function   dsDNA binding (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1512585..1522893
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  V4943_RS08180 (V4943_08180) - 1513666..1514130 (+) 465 WP_011173967.1 hypothetical protein -
  V4943_RS08185 (V4943_08185) pfkA 1514107..1515075 (-) 969 WP_011173968.1 6-phosphofructokinase -
  V4943_RS08190 (V4943_08190) rsmI 1515072..1515866 (-) 795 WP_011173969.1 16S rRNA (cytidine(1402)-2'-O)-methyltransferase -
  V4943_RS08195 (V4943_08195) - 1515868..1516362 (-) 495 WP_011173970.1 hypothetical protein -
  V4943_RS08200 (V4943_08200) - 1516426..1516953 (-) 528 WP_011173971.1 inorganic diphosphatase -
  V4943_RS08205 (V4943_08205) - 1516986..1517612 (+) 627 WP_011173972.1 YcxB family protein -
  V4943_RS08210 (V4943_08210) comEA 1517585..1517893 (+) 309 WP_024119555.1 helix-hairpin-helix domain-containing protein Machinery gene
  V4943_RS08215 (V4943_08215) comA/comEC 1517890..1519923 (+) 2034 WP_011173974.1 ComEC/Rec2 family competence protein Machinery gene
  V4943_RS08220 (V4943_08220) - 1519911..1520720 (-) 810 WP_011173975.1 ParB/RepB/Spo0J family partition protein -
  V4943_RS08225 (V4943_08225) soj 1520704..1521453 (-) 750 WP_011173976.1 chromosome-partitioning ATPase Soj -
  V4943_RS08230 (V4943_08230) rsmG 1521447..1522196 (-) 750 WP_011173977.1 16S rRNA (guanine(527)-N(7))-methyltransferase RsmG -

Sequence

Protein


Download         Length: 102 a.a.        Molecular weight: 10947.23 Da        Isoelectric Point: 10.3435

>NTDB_id=934428 V4943_RS08210 WP_024119555.1 1517585..1517893(+) (comEA) [Thermus thermophilus strain HB27_delta_csm3]
MVLGYLLAVALLGLLALWPKLAPAPLPVRVEALGKVAPLPQAQTPVSLNEASLEELMALPGIGPVLARRIVEGRPYARVE
DLLKVKGIGPATLERLRPYLRP

Nucleotide


Download         Length: 309 bp        

>NTDB_id=934428 V4943_RS08210 WP_024119555.1 1517585..1517893(+) (comEA) [Thermus thermophilus strain HB27_delta_csm3]
CTGGTCCTCGGCTACCTCCTCGCGGTAGCCCTCCTCGGCCTCCTCGCCCTCTGGCCCAAGCTCGCCCCCGCCCCGCTTCC
GGTGCGGGTGGAGGCCCTGGGAAAGGTCGCCCCTTTGCCCCAGGCGCAAACCCCCGTGAGCCTGAACGAGGCGAGCCTGG
AAGAGCTCATGGCCCTGCCCGGCATCGGCCCCGTCCTGGCCCGGCGCATCGTGGAGGGCAGGCCCTACGCCCGGGTGGAG
GACCTCCTCAAGGTGAAAGGGATCGGCCCCGCCACCCTGGAGCGCCTCCGCCCCTACCTCCGGCCATGA

Domains

Predicted by InterproScan.

Helix-hairpin-helix motif (HHH_3)

(42-101)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comEA Thermus thermophilus HB27

100

100

1
  comEA Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

39.815

100

0.422