Detailed information    

insolico Bioinformatically predicted

Overview

Name   codY   Type   Regulator
Locus tag   ACCK16_RS05955 Genome accession   NZ_CP168089
Coordinates   1233570..1234343 (+) Length   257 a.a.
NCBI ID   WP_000055334.1    Uniprot ID   -
Organism   Staphylococcus aureus strain CUBIST-23     
Function   repression of comK (predicted from homology)   
Competence regulation

Genomic Context

Location: 1228570..1239343
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACCK16_RS05935 (ACCK16_05935) trmFO 1228913..1230220 (+) 1308 WP_000195251.1 methylenetetrahydrofolate--tRNA-(uracil(54)- C(5))-methyltransferase (FADH(2)-oxidizing) TrmFO -
  ACCK16_RS05940 (ACCK16_05940) xerC 1230638..1231534 (+) 897 WP_001015604.1 tyrosine recombinase XerC -
  ACCK16_RS05945 (ACCK16_05945) hslV 1231531..1232076 (+) 546 WP_000072681.1 ATP-dependent protease subunit HslV -
  ACCK16_RS05950 (ACCK16_05950) hslU 1232142..1233545 (+) 1404 WP_000379054.1 ATP-dependent protease ATPase subunit HslU -
  ACCK16_RS05955 (ACCK16_05955) codY 1233570..1234343 (+) 774 WP_000055334.1 GTP-sensing pleiotropic transcriptional regulator CodY Regulator
  ACCK16_RS05960 (ACCK16_05960) - 1234394..1234486 (+) 93 WP_031785459.1 hypothetical protein -
  ACCK16_RS05965 (ACCK16_05965) rpsB 1234685..1235452 (+) 768 WP_000268484.1 30S ribosomal protein S2 -
  ACCK16_RS05970 (ACCK16_05970) - 1235486..1235599 (+) 114 WP_001789890.1 hypothetical protein -
  ACCK16_RS05975 (ACCK16_05975) tsf 1235634..1236515 (+) 882 WP_000201387.1 translation elongation factor Ts -
  ACCK16_RS05980 (ACCK16_05980) pyrH 1236652..1237374 (+) 723 WP_000057330.1 UMP kinase -
  ACCK16_RS05985 (ACCK16_05985) frr 1237393..1237947 (+) 555 WP_001280003.1 ribosome recycling factor -
  ACCK16_RS05990 (ACCK16_05990) - 1238319..1239089 (+) 771 WP_000473705.1 isoprenyl transferase -

Sequence

Protein


Download         Length: 257 a.a.        Molecular weight: 28727.12 Da        Isoelectric Point: 6.0680

>NTDB_id=934338 ACCK16_RS05955 WP_000055334.1 1233570..1234343(+) (codY) [Staphylococcus aureus strain CUBIST-23]
MSLLSKTRELNTLLQKHKGIAVDFKDVAQTISSVTVTNVFIVSRRGKILGSSLNELLKSQRIIQMLEERHIPSEYTERLM
EVKQTESNIDIDNVLTVFPPENKELFIDSRTTIFPILGGGERLGTLVLGRVHDDFNENDLVLGEYAATVIGMEILREKHS
EVEKEARDKAAITMAINSLSYSEKEAIEHIFEELGGTEGLLIASKVADRVGITRSVIVNALRKLESAGVIESRSLGMKGT
FIKVKKEKFLDELEKSK

Nucleotide


Download         Length: 774 bp        

>NTDB_id=934338 ACCK16_RS05955 WP_000055334.1 1233570..1234343(+) (codY) [Staphylococcus aureus strain CUBIST-23]
ATGAGCTTATTATCTAAAACGAGAGAGTTAAACACGTTACTTCAAAAACACAAAGGTATTGCGGTTGATTTTAAAGATGT
AGCACAAACGATTAGTAGCGTAACTGTAACAAATGTATTTATTGTATCGCGTCGAGGTAAAATTTTAGGATCGAGTCTAA
ATGAATTATTAAAAAGTCAAAGAATTATTCAAATGTTGGAAGAAAGACATATTCCAAGTGAATATACAGAACGATTAATG
GAAGTTAAACAAACAGAATCAAATATTGATATCGACAATGTATTAACAGTTTTCCCACCTGAAAATAAAGAGTTGTTTAT
TGATAGTCGTACAACTATCTTCCCAATTTTAGGTGGAGGAGAAAGATTAGGTACATTAGTACTTGGTCGAGTACATGATG
ATTTTAATGAAAATGATTTGGTATTAGGTGAATATGCTGCTACAGTTATTGGTATGGAAATCTTACGTGAGAAGCATAGC
GAAGTAGAAAAAGAAGCGCGCGATAAAGCTGCTATTACAATGGCAATTAATTCATTATCTTATTCTGAAAAAGAAGCAAT
TGAACATATCTTTGAAGAACTTGGCGGTACGGAAGGCCTATTAATCGCATCAAAAGTTGCAGATAGAGTTGGTATTACTA
GATCTGTAATTGTAAATGCACTACGTAAATTAGAAAGTGCTGGTGTAATTGAATCACGTTCTTTAGGAATGAAAGGTACT
TTCATTAAAGTTAAAAAAGAAAAATTCTTAGATGAATTAGAAAAAAGTAAGTAA

Domains

Predicted by InterProScan.

CodY GAF-like domain (CodY)

(2-178)

CodY helix-turn-helix domain (HTH_CodY)

(198-255)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  codY Bacillus subtilis subsp. subtilis str. 168

63.813

100

0.638
  codY Lactococcus lactis subsp. lactis strain DGCC12653

42.802

100

0.428