Detailed information NTG0934304

Bioinformatically predicted

Overview

• Name: xcpW
• Type: Machinery gene
• Locus tag: V4Q78_RS11425
• Genome accession: NZ_CP144563
• Coordinates: 2286073..2286774 (-)
• Length: 233 a.a.
• NCBI ID: WP_000594579.1
• Uniprot ID: A0A0D5YJA0
• Organism: Acinetobacter baumannii strain AB5075 isolate grey variant
• Function: pseudopilus assembly (predicted from homology) DNA binding and uptake

Genomic Context

Location: 2281073..2291774

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
V4Q78_RS11395 (V4Q78_11395)	-	2281380..2281823 (-)	444	WP_001246675.1	SRPBCC family protein	-
V4Q78_RS11400 (V4Q78_11400)	tadA	2281893..2282396 (-)	504	WP_001997771.1	tRNA adenosine(34) deaminase TadA	-
V4Q78_RS11405 (V4Q78_11405)	-	2282403..2283527 (-)	1125	WP_001983908.1	enoyl-CoA hydratase/isomerase family protein	-
V4Q78_RS11410 (V4Q78_11410)	ung	2283524..2284237 (-)	714	WP_001177527.1	uracil-DNA glycosylase	-
V4Q78_RS11415 (V4Q78_11415)	-	2284288..2284884 (-)	597	WP_000908449.1	6-carboxytetrahydropterin synthase	-
V4Q78_RS11420 (V4Q78_11420)	gspK	2285114..2286073 (-)	960	WP_000301478.1	type II secretion system minor pseudopilin GspK	-
V4Q78_RS11425 (V4Q78_11425)	xcpW	2286073..2286774 (-)	702	WP_000594579.1	type II secretion system minor pseudopilin GspJ	Machinery gene
V4Q78_RS11430 (V4Q78_11430)	xcpV	2286774..2287154 (-)	381	WP_000836914.1	type II secretion system minor pseudopilin GspI	Machinery gene
V4Q78_RS11435 (V4Q78_11435)	-	2287144..2287698 (-)	555	WP_000841373.1	type II secretion system protein	-
V4Q78_RS11440 (V4Q78_11440)	-	2287708..2288316 (-)	609	WP_000375838.1	TetR/AcrR family transcriptional regulator	-
V4Q78_RS11445 (V4Q78_11445)	-	2288354..2289127 (-)	774	WP_000497300.1	TatD family hydrolase	-
V4Q78_RS11450 (V4Q78_11450)	-	2289145..2289486 (-)	342	WP_001183027.1	PilZ domain-containing protein	-
V4Q78_RS11455 (V4Q78_11455)	-	2289498..2290478 (-)	981	WP_001075416.1	DNA polymerase III subunit delta'	-
V4Q78_RS11460 (V4Q78_11460)	kdsB	2290490..2291251 (-)	762	WP_000680692.1	3-deoxy-manno-octulosonate cytidylyltransferase	-

Sequence

Protein

• Length: 233 a.a.
• Molecular weight: 26707.66 Da
• Isoelectric Point: 9.5501

>NTDB_id=934304 V4Q78_RS11425 WP_000594579.1 2286073..2286774(-) (xcpW) [Acinetobacter baumannii strain AB5075 isolate grey variant]
MIKNKYIHIRSFSSRLAARSSSARLTRVSGFTLVELLVAIAIFAVLSLLGWKIFDYLFKVRDRNAEHEVHLFELQDAYQQ
ILRDTLQIIPLSANQGGQLHPALEIDNQILRFSKAGVTDPLKQGLSPFERIEYRYDADQKKLYRLKYTNLNTSNREQPLS
STLLSQVDQYQIMVLTPQEVTKWPEVNIDPTKPNELKKLPKGIKIQLTVAGVNYEWIYSLNQGDLSLSQEGNS

Nucleotide

• Length: 702 bp

>NTDB_id=934304 V4Q78_RS11425 WP_000594579.1 2286073..2286774(-) (xcpW) [Acinetobacter baumannii strain AB5075 isolate grey variant]
ATGATAAAAAATAAATATATTCACATCCGAAGCTTTTCTTCTCGTCTTGCAGCACGATCGAGCAGTGCTCGATTAACTCG
CGTCTCAGGATTTACTTTGGTTGAATTGTTAGTCGCGATCGCTATCTTTGCGGTTTTATCTTTATTGGGGTGGAAAATTT
TCGATTACTTGTTCAAAGTTCGTGATCGTAATGCCGAACATGAAGTGCATTTATTTGAATTACAAGATGCTTATCAACAA
ATTCTTCGTGATACTTTGCAGATTATCCCTTTATCCGCAAACCAAGGTGGTCAACTTCATCCAGCTTTAGAAATCGATAA
TCAAATTTTACGTTTTAGCAAAGCGGGCGTAACGGATCCTTTAAAACAAGGCTTATCACCATTTGAACGAATTGAATATC
GTTATGATGCAGACCAAAAAAAATTATATCGTCTTAAATATACAAATTTGAATACTTCGAACAGAGAGCAACCTTTATCG
AGTACTTTGTTAAGTCAAGTCGACCAATATCAGATTATGGTTTTGACTCCGCAAGAAGTCACAAAATGGCCCGAGGTTAA
TATTGATCCAACGAAACCTAATGAGTTAAAAAAATTACCGAAAGGGATAAAAATCCAACTTACAGTCGCTGGTGTAAATT
ATGAGTGGATTTATAGCTTAAATCAGGGTGACTTATCGCTTTCGCAGGAAGGTAATTCATAA

Domains

Predicted by InterproScan.

• Type II secretion system (T2SS), protein J (T2SSJ) (83-212)

• Prokaryotic N-terminal methylation motif (N_methyl) (27-49)

3D structure

• AlphaFold DB: A0A0D5YJA0

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
xcpW	Acinetobacter baumannii D1279779	98.283	100	0.983