Detailed information NTG0934257

Bioinformatically predicted

Overview

• Name: xcpW
• Type: Machinery gene
• Locus tag: V4Q77_RS11270
• Genome accession: NZ_CP144559
• Coordinates: 2266633..2267334 (-)
• Length: 233 a.a.
• NCBI ID: WP_000594579.1
• Uniprot ID: A0A0D5YJA0
• Organism: Acinetobacter baumannii strain AB5075
• Function: pseudopilus assembly (predicted from homology) DNA binding and uptake

Genomic Context

Location: 2261633..2272334

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
V4Q77_RS11240 (V4Q77_11240)	-	2261940..2262383 (-)	444	WP_001246675.1	SRPBCC family protein	-
V4Q77_RS11245 (V4Q77_11245)	tadA	2262453..2262956 (-)	504	WP_001997771.1	tRNA adenosine(34) deaminase TadA	-
V4Q77_RS11250 (V4Q77_11250)	-	2262963..2264087 (-)	1125	WP_001983908.1	enoyl-CoA hydratase/isomerase family protein	-
V4Q77_RS11255 (V4Q77_11255)	ung	2264084..2264797 (-)	714	WP_001177527.1	uracil-DNA glycosylase	-
V4Q77_RS11260 (V4Q77_11260)	-	2264848..2265444 (-)	597	WP_000908449.1	6-carboxytetrahydropterin synthase	-
V4Q77_RS11265 (V4Q77_11265)	gspK	2265674..2266633 (-)	960	WP_000301478.1	type II secretion system minor pseudopilin GspK	-
V4Q77_RS11270 (V4Q77_11270)	xcpW	2266633..2267334 (-)	702	WP_000594579.1	type II secretion system minor pseudopilin GspJ	Machinery gene
V4Q77_RS11275 (V4Q77_11275)	xcpV	2267334..2267714 (-)	381	WP_000836914.1	type II secretion system minor pseudopilin GspI	Machinery gene
V4Q77_RS11280 (V4Q77_11280)	-	2267704..2268258 (-)	555	WP_000841373.1	type II secretion system protein	-
V4Q77_RS11285 (V4Q77_11285)	-	2268268..2268876 (-)	609	WP_000375838.1	TetR/AcrR family transcriptional regulator	-
V4Q77_RS11290 (V4Q77_11290)	-	2268914..2269687 (-)	774	WP_000497300.1	TatD family hydrolase	-
V4Q77_RS11295 (V4Q77_11295)	-	2269705..2270046 (-)	342	WP_001183027.1	PilZ domain-containing protein	-
V4Q77_RS11300 (V4Q77_11300)	-	2270058..2271038 (-)	981	WP_001075416.1	DNA polymerase III subunit delta'	-
V4Q77_RS11305 (V4Q77_11305)	kdsB	2271050..2271811 (-)	762	WP_000680692.1	3-deoxy-manno-octulosonate cytidylyltransferase	-

Sequence

Protein

• Length: 233 a.a.
• Molecular weight: 26707.66 Da
• Isoelectric Point: 9.5501

>NTDB_id=934257 V4Q77_RS11270 WP_000594579.1 2266633..2267334(-) (xcpW) [Acinetobacter baumannii strain AB5075]
MIKNKYIHIRSFSSRLAARSSSARLTRVSGFTLVELLVAIAIFAVLSLLGWKIFDYLFKVRDRNAEHEVHLFELQDAYQQ
ILRDTLQIIPLSANQGGQLHPALEIDNQILRFSKAGVTDPLKQGLSPFERIEYRYDADQKKLYRLKYTNLNTSNREQPLS
STLLSQVDQYQIMVLTPQEVTKWPEVNIDPTKPNELKKLPKGIKIQLTVAGVNYEWIYSLNQGDLSLSQEGNS

Nucleotide

• Length: 702 bp

>NTDB_id=934257 V4Q77_RS11270 WP_000594579.1 2266633..2267334(-) (xcpW) [Acinetobacter baumannii strain AB5075]
ATGATAAAAAATAAATATATTCACATCCGAAGCTTTTCTTCTCGTCTTGCAGCACGATCGAGCAGTGCTCGATTAACTCG
CGTCTCAGGATTTACTTTGGTTGAATTGTTAGTCGCGATCGCTATCTTTGCGGTTTTATCTTTATTGGGGTGGAAAATTT
TCGATTACTTGTTCAAAGTTCGTGATCGTAATGCCGAACATGAAGTGCATTTATTTGAATTACAAGATGCTTATCAACAA
ATTCTTCGTGATACTTTGCAGATTATCCCTTTATCCGCAAACCAAGGTGGTCAACTTCATCCAGCTTTAGAAATCGATAA
TCAAATTTTACGTTTTAGCAAAGCGGGCGTAACGGATCCTTTAAAACAAGGCTTATCACCATTTGAACGAATTGAATATC
GTTATGATGCAGACCAAAAAAAATTATATCGTCTTAAATATACAAATTTGAATACTTCGAACAGAGAGCAACCTTTATCG
AGTACTTTGTTAAGTCAAGTCGACCAATATCAGATTATGGTTTTGACTCCGCAAGAAGTCACAAAATGGCCCGAGGTTAA
TATTGATCCAACGAAACCTAATGAGTTAAAAAAATTACCGAAAGGGATAAAAATCCAACTTACAGTCGCTGGTGTAAATT
ATGAGTGGATTTATAGCTTAAATCAGGGTGACTTATCGCTTTCGCAGGAAGGTAATTCATAA

Domains

Predicted by InterproScan.

• Type II secretion system (T2SS), protein J (T2SSJ) (83-212)

• Prokaryotic N-terminal methylation motif (N_methyl) (27-49)

3D structure

• AlphaFold DB: A0A0D5YJA0

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
xcpW	Acinetobacter baumannii D1279779	98.283	100	0.983