NTDB

Overview

Name	codY	Type	Regulator
Locus tag	ACDZ08_RS05780	Genome accession	NZ_CP168014
Coordinates	1201418..1202191 (+)	Length	257 a.a.
NCBI ID	WP_000055337.1	Uniprot ID	P63843
Organism	Staphylococcus aureus strain sa230627_barcode16
Function	repression of comK (predicted from homology) Competence regulation

Genomic Context

Location: 1196418..1207191

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
ACDZ08_RS05760 (ACDZ08_05760)	trmFO	1196762..1198069 (+)	1308	WP_000195254.1	methylenetetrahydrofolate--tRNA-(uracil(54)- C(5))-methyltransferase (FADH(2)-oxidizing) TrmFO	-
ACDZ08_RS05765 (ACDZ08_05765)	xerC	1198486..1199382 (+)	897	WP_001015597.1	tyrosine recombinase XerC	-
ACDZ08_RS05770 (ACDZ08_05770)	hslV	1199379..1199924 (+)	546	WP_000072681.1	ATP-dependent protease subunit HslV	-
ACDZ08_RS05775 (ACDZ08_05775)	hslU	1199990..1201393 (+)	1404	WP_000379054.1	ATP-dependent protease ATPase subunit HslU	-
ACDZ08_RS05780 (ACDZ08_05780)	codY	1201418..1202191 (+)	774	WP_000055337.1	GTP-sensing pleiotropic transcriptional regulator CodY	Regulator
ACDZ08_RS05785 (ACDZ08_05785)	-	1202242..1202334 (+)	93	WP_001790530.1	hypothetical protein	-
ACDZ08_RS05790 (ACDZ08_05790)	rpsB	1202533..1203300 (+)	768	WP_000268484.1	30S ribosomal protein S2	-
ACDZ08_RS05795 (ACDZ08_05795)	-	1203334..1203447 (+)	114	WP_001789890.1	hypothetical protein	-
ACDZ08_RS05800 (ACDZ08_05800)	tsf	1203482..1204363 (+)	882	WP_000201387.1	translation elongation factor Ts	-
ACDZ08_RS05805 (ACDZ08_05805)	pyrH	1204500..1205222 (+)	723	WP_000057330.1	UMP kinase	-
ACDZ08_RS05810 (ACDZ08_05810)	frr	1205241..1205795 (+)	555	WP_001280006.1	ribosome recycling factor	-
ACDZ08_RS05815 (ACDZ08_05815)	-	1206168..1206938 (+)	771	WP_000473705.1	isoprenyl transferase	-

Sequence

Protein

Download Length: 257 a.a. Molecular weight: 28755.13 Da Isoelectric Point: 6.0680

                                >NTDB_id=933908 ACDZ08_RS05780 WP_000055337.1 1201418..1202191(+) (codY) [Staphylococcus aureus strain sa230627_barcode16]

MSLLSKTRELNTLLQKHKGIAVDFKDVAQTISSVTVTNVFIVSRRGKILGSSLNELLKSQRIIQMLEERHIPSEYTERLM

EVKQTESNIDIDNVLTVFPPENRELFIDSRTTIFPILGGGERLGTLVLGRVHDDFNENDLVLGEYAATVIGMEILREKHS

EVEKEARDKAAITMAINSLSYSEKEAIEHIFEELGGTEGLLIASKVADRVGITRSVIVNALRKLESAGVIESRSLGMKGT

FIKVKKEKFLDELEKSK

Nucleotide

Download Length: 774 bp

                                >NTDB_id=933908 ACDZ08_RS05780 WP_000055337.1 1201418..1202191(+) (codY) [Staphylococcus aureus strain sa230627_barcode16]

ATGAGCTTATTATCTAAAACGAGAGAGTTAAACACGTTACTTCAAAAACACAAAGGTATTGCGGTTGATTTTAAAGATGT

AGCACAAACGATTAGTAGCGTAACTGTAACAAATGTATTTATTGTATCGCGTCGAGGTAAAATTTTAGGATCGAGTCTAA

ATGAATTATTAAAAAGTCAAAGAATTATTCAAATGTTGGAAGAAAGACATATTCCAAGTGAATATACAGAACGATTAATG

GAAGTTAAACAAACAGAATCAAATATTGATATCGACAATGTATTAACAGTATTCCCACCTGAAAACAGAGAATTATTCAT

AGATAGTCGTACAACTATCTTCCCAATTTTAGGTGGAGGGGAAAGATTAGGTACATTAGTACTTGGTCGAGTACATGATG

ATTTTAATGAAAATGATTTGGTACTAGGTGAATATGCTGCTACAGTTATTGGTATGGAAATCTTACGTGAGAAGCATAGT

GAAGTAGAAAAAGAAGCGCGCGATAAAGCTGCTATTACAATGGCAATTAATTCATTATCTTATTCTGAAAAAGAAGCGAT

TGAACATATCTTTGAAGAACTTGGCGGTACGGAAGGCCTATTAATCGCATCAAAAGTTGCAGATAGAGTTGGTATTACTA

GATCTGTAATTGTAAATGCACTACGTAAATTAGAAAGTGCTGGTGTAATTGAATCACGTTCTTTAGGAATGAAAGGTACT

TTCATTAAAGTTAAAAAAGAAAAATTCTTAGATGAATTAGAAAAAAGTAAATAA

Domains

Predicted by InterProScan.

CodY GAF-like domain (CodY)

(2-178)

CodY helix-turn-helix domain (HTH_CodY)

(198-255)

Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.

3D structure

Source	ID	Structure
AlphaFold DB	P63843

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.

Visualization of predicted probability:

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	H_a-value
codY	Bacillus subtilis subsp. subtilis str. 168	64.202	100	0.642
codY	Lactococcus lactis subsp. lactis strain DGCC12653	42.802	100	0.428

Detailed information NTG0933908