Detailed information    

insolico Bioinformatically predicted

Overview

Name   codY   Type   Regulator
Locus tag   V3829_RS12120 Genome accession   NZ_CP144358
Coordinates   2456949..2457728 (-) Length   259 a.a.
NCBI ID   WP_003154263.1    Uniprot ID   I2C545
Organism   Bacillus velezensis strain DJ4     
Function   repression of comK (predicted from homology)   
Competence regulation

Genomic Context

Location: 2451949..2462728
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  V3829_RS12090 fliH 2451993..2452748 (-) 756 WP_003154255.1 flagellar assembly protein FliH -
  V3829_RS12095 fliG 2452741..2453757 (-) 1017 WP_003154256.1 flagellar motor switch protein FliG -
  V3829_RS12100 fliF 2453770..2455380 (-) 1611 WP_003154257.1 flagellar basal-body MS-ring/collar protein FliF -
  V3829_RS12105 fliE 2455423..2455743 (-) 321 WP_003154258.1 flagellar hook-basal body complex protein FliE -
  V3829_RS12110 flgC 2455754..2456206 (-) 453 WP_003154259.1 flagellar basal body rod protein FlgC -
  V3829_RS12115 flgB 2456206..2456595 (-) 390 WP_003154260.1 flagellar basal body rod protein FlgB -
  V3829_RS12120 codY 2456949..2457728 (-) 780 WP_003154263.1 GTP-sensing pleiotropic transcriptional regulator CodY Regulator
  V3829_RS12125 hslU 2457766..2459169 (-) 1404 WP_003154265.1 HslU--HslV peptidase ATPase subunit -
  V3829_RS12130 hslV 2459186..2459731 (-) 546 WP_003154267.1 ATP-dependent protease subunit HslV -
  V3829_RS12135 xerC 2459747..2460664 (-) 918 WP_007409774.1 tyrosine recombinase XerC -
  V3829_RS12140 trmFO 2460734..2462041 (-) 1308 WP_003154273.1 FADH(2)-oxidizing methylenetetrahydrofolate--tRNA-(uracil(54)-C(5))- methyltransferase TrmFO -

Sequence

Protein


Download         Length: 259 a.a.        Molecular weight: 29056.24 Da        Isoelectric Point: 4.6017

>NTDB_id=933735 V3829_RS12120 WP_003154263.1 2456949..2457728(-) (codY) [Bacillus velezensis strain DJ4]
MALLQKTRIINSMLQAAAGKPVNFKEMAETLRDVIDSNIFVVSRRGKLLGYSINQQIENDRMKKMLEDRQFPEEYTRNLF
NVPETSSNLDINSEYTAFPVENRDLFQAGLTTIVPIIGGGERLGTLILSRLQDQFEDDDLILAEYGATVVGMEILREKAE
EIEEEARSKAVVQMAISSLSYSELEAIEHIFEELDGNEGLLVASKIADRVGITRSVIVNALRKLESAGVIESRSLGMKGT
YIKVLNNKFLIELENLKSH

Nucleotide


Download         Length: 780 bp        

>NTDB_id=933735 V3829_RS12120 WP_003154263.1 2456949..2457728(-) (codY) [Bacillus velezensis strain DJ4]
ATGGCTTTACTACAAAAAACACGAATTATTAACAGCATGCTGCAGGCTGCGGCAGGCAAACCCGTAAACTTTAAAGAAAT
GGCTGAAACGCTTCGTGACGTCATTGATTCTAATATTTTCGTCGTCAGCCGCAGAGGAAAGCTTTTGGGCTACTCTATTA
ATCAGCAGATTGAAAATGACCGCATGAAAAAAATGCTTGAAGACCGCCAGTTCCCGGAAGAGTACACGAGAAATCTGTTC
AATGTTCCGGAGACGTCTTCAAACCTTGATATCAACAGCGAATACACGGCGTTTCCTGTGGAAAACAGAGACCTGTTCCA
AGCGGGCTTAACAACGATCGTGCCGATCATCGGCGGAGGAGAGAGACTGGGCACGCTGATTCTGTCCCGTCTGCAGGATC
AATTTGAAGATGATGATCTCATTCTTGCTGAATACGGAGCAACCGTTGTAGGAATGGAGATTTTAAGAGAAAAAGCGGAA
GAAATCGAAGAAGAGGCGCGAAGCAAAGCGGTTGTTCAAATGGCGATCAGTTCTCTGTCTTACAGTGAACTTGAAGCGAT
TGAGCATATCTTTGAAGAGCTTGACGGAAATGAAGGCTTGCTTGTGGCAAGTAAGATTGCGGACCGTGTCGGCATTACGC
GTTCAGTAATCGTTAACGCGCTGAGAAAGCTGGAAAGCGCAGGCGTCATTGAATCCAGATCATTGGGAATGAAGGGGACG
TACATTAAAGTTCTGAACAACAAATTCCTTATTGAATTGGAAAACCTTAAATCTCATTAA

Domains

Predicted by InterproScan.

CodY GAF-like domain (CodY)

(3-178)

CodY helix-turn-helix domain (HTH_CodY)

(198-255)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB I2C545

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  codY Bacillus subtilis subsp. subtilis str. 168

99.228

100

0.992
  codY Lactococcus lactis subsp. lactis strain DGCC12653

47.843

98.456

0.471