Detailed information    

insolico Bioinformatically predicted

Overview

Name   codY   Type   Regulator
Locus tag   V3H91_RS08595 Genome accession   NZ_CP144281
Coordinates   1662574..1663353 (+) Length   259 a.a.
NCBI ID   WP_003154263.1    Uniprot ID   I2C545
Organism   Bacillus velezensis strain SEC-024A     
Function   repression of comK (predicted from homology)   
Competence regulation

Genomic Context

Location: 1657574..1668353
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  V3H91_RS08575 trmFO 1658261..1659568 (+) 1308 WP_003154273.1 FADH(2)-oxidizing methylenetetrahydrofolate--tRNA-(uracil(54)-C(5))- methyltransferase TrmFO -
  V3H91_RS08580 xerC 1659638..1660555 (+) 918 WP_007409774.1 tyrosine recombinase XerC -
  V3H91_RS08585 hslV 1660571..1661116 (+) 546 WP_003154267.1 ATP-dependent protease subunit HslV -
  V3H91_RS08590 hslU 1661133..1662536 (+) 1404 WP_014305002.1 HslU--HslV peptidase ATPase subunit -
  V3H91_RS08595 codY 1662574..1663353 (+) 780 WP_003154263.1 GTP-sensing pleiotropic transcriptional regulator CodY Regulator
  V3H91_RS08600 flgB 1663707..1664096 (+) 390 WP_003154260.1 flagellar basal body rod protein FlgB -
  V3H91_RS08605 flgC 1664096..1664548 (+) 453 WP_003154259.1 flagellar basal body rod protein FlgC -
  V3H91_RS08610 fliE 1664559..1664879 (+) 321 WP_007409777.1 flagellar hook-basal body complex protein FliE -
  V3H91_RS08615 fliF 1664922..1666532 (+) 1611 WP_003154257.1 flagellar basal-body MS-ring/collar protein FliF -
  V3H91_RS08620 fliG 1666545..1667561 (+) 1017 WP_003154256.1 flagellar motor switch protein FliG -
  V3H91_RS08625 fliH 1667554..1668309 (+) 756 WP_025851275.1 flagellar assembly protein FliH -

Sequence

Protein


Download         Length: 259 a.a.        Molecular weight: 29056.24 Da        Isoelectric Point: 4.6017

>NTDB_id=933358 V3H91_RS08595 WP_003154263.1 1662574..1663353(+) (codY) [Bacillus velezensis strain SEC-024A]
MALLQKTRIINSMLQAAAGKPVNFKEMAETLRDVIDSNIFVVSRRGKLLGYSINQQIENDRMKKMLEDRQFPEEYTRNLF
NVPETSSNLDINSEYTAFPVENRDLFQAGLTTIVPIIGGGERLGTLILSRLQDQFEDDDLILAEYGATVVGMEILREKAE
EIEEEARSKAVVQMAISSLSYSELEAIEHIFEELDGNEGLLVASKIADRVGITRSVIVNALRKLESAGVIESRSLGMKGT
YIKVLNNKFLIELENLKSH

Nucleotide


Download         Length: 780 bp        

>NTDB_id=933358 V3H91_RS08595 WP_003154263.1 1662574..1663353(+) (codY) [Bacillus velezensis strain SEC-024A]
ATGGCTTTACTACAAAAAACACGAATTATTAACAGCATGCTGCAGGCTGCGGCAGGCAAACCCGTAAACTTTAAAGAAAT
GGCTGAAACGCTTCGTGACGTCATTGATTCTAATATTTTCGTCGTCAGCCGCAGAGGAAAGCTTTTGGGCTACTCTATTA
ATCAGCAGATTGAAAATGACCGCATGAAAAAAATGCTTGAAGACCGCCAGTTCCCGGAAGAGTACACGAGAAATCTGTTC
AATGTTCCGGAGACGTCTTCAAACCTTGATATCAACAGCGAATACACGGCGTTTCCTGTGGAAAACAGAGACCTGTTCCA
AGCGGGCTTAACAACGATCGTGCCGATCATCGGCGGAGGAGAGAGACTGGGCACGCTGATTCTGTCCCGTCTGCAGGATC
AATTTGAAGATGATGATCTCATTCTTGCTGAATACGGAGCAACCGTTGTAGGAATGGAGATTTTAAGAGAAAAAGCGGAA
GAAATCGAAGAAGAGGCGCGAAGCAAAGCGGTTGTTCAAATGGCGATCAGTTCTCTGTCTTACAGTGAACTTGAAGCGAT
TGAGCATATCTTTGAAGAGCTTGACGGAAATGAAGGCTTGCTTGTGGCAAGTAAGATTGCGGACCGTGTCGGCATTACGC
GTTCAGTAATCGTTAACGCGCTGAGAAAGCTGGAAAGCGCAGGCGTCATTGAATCCAGATCATTGGGAATGAAGGGGACG
TACATTAAAGTTCTGAACAACAAATTCCTTATTGAATTGGAAAACCTTAAATCTCATTAA

Domains

Predicted by InterproScan.

CodY GAF-like domain (CodY)

(3-178)

CodY helix-turn-helix domain (HTH_CodY)

(198-255)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB I2C545

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  codY Bacillus subtilis subsp. subtilis str. 168

99.228

100

0.992
  codY Lactococcus lactis subsp. lactis strain DGCC12653

47.843

98.456

0.471