Detailed information    

insolico Bioinformatically predicted

Overview

Name   recD2   Type   Machinery gene
Locus tag   MWM02_RS04900 Genome accession   NZ_AP025627
Coordinates   969573..971927 (+) Length   784 a.a.
NCBI ID   WP_064549734.1    Uniprot ID   A0A1B7KWI3
Organism   Parageobacillus sp. KH3-4     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 964573..976927
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  MWM02_RS04875 (PspKH34_09180) - 965357..966019 (+) 663 WP_064549729.1 YitT family protein -
  MWM02_RS04880 (PspKH34_09190) - 966030..966446 (+) 417 WP_064549730.1 Rrf2 family transcriptional regulator -
  MWM02_RS04885 (PspKH34_09200) - 966467..967612 (+) 1146 WP_064549731.1 cysteine desulfurase family protein -
  MWM02_RS04890 (PspKH34_09210) mnmA 967629..968744 (+) 1116 WP_064549732.1 tRNA 2-thiouridine(34) synthase MnmA -
  MWM02_RS04895 (PspKH34_09220) - 968893..969555 (+) 663 WP_064549733.1 tetratricopeptide repeat protein -
  MWM02_RS04900 (PspKH34_09230) recD2 969573..971927 (+) 2355 WP_064549734.1 ATP-dependent RecD-like DNA helicase Machinery gene
  MWM02_RS04905 (PspKH34_09240) - 971963..972436 (+) 474 WP_064549735.1 PRC-barrel domain-containing protein -
  MWM02_RS04910 (PspKH34_09250) - 972452..972643 (+) 192 WP_064549736.1 hypothetical protein -
  MWM02_RS04915 (PspKH34_09260) - 972656..972790 (+) 135 WP_081260169.1 YrzQ family protein -
  MWM02_RS04920 (PspKH34_09270) - 972890..973951 (+) 1062 WP_064549737.1 AI-2E family transporter -
  MWM02_RS04925 (PspKH34_09280) alaS 974281..976914 (+) 2634 WP_244403065.1 alanine--tRNA ligase -

Sequence

Protein


Download         Length: 784 a.a.        Molecular weight: 87674.10 Da        Isoelectric Point: 5.0979

>NTDB_id=93285 MWM02_RS04900 WP_064549734.1 969573..971927(+) (recD2) [Parageobacillus sp. KH3-4]
MQQPESFVFEGTSFIKGSYISTIFHNEANLYSVVRVRVEETNEAYDEQEVVVTGYFPKMNEHDTYIFYGKFHDHPKFGRQ
YVVEHFRKQFPNTKDGIIHYLSSDLFKGIGKKTAKAIVEALGENAISKILADPSVLDDVPKLSKQRAKELYDTLRAHEGL
EQTMIALSQFGFGPQLSMKIYQVYQDETLSVIQQNPYQLVEDVEGIGFGRADELGYRLGISGNHPARIRAACLFVIERDC
LQEGHVYVTERQLLTNVKQLLEAKRKETVSEEAIEQMLLMLAEEGKLIKEDEKFYIPSLYFAEKGIVANVKRLLQQTEAV
VAFPESEFLLALGRLEERLSVQYAPSQKEAIRQALSSPLFILTGGPGTGKTTVIKGIVEIFADLHGLSLDPKDYTKDHPF
PILLAAPTGRAAKRMSEATGLPAVTIHRLLGWNGAEGFTHDEDEPISGKLLIVDEMSMVDTWLANQLFKSIPDGMQVILV
GDEDQLPSVGPGQVLKDLLQAGVIPTIRLTEVYRQAEGSSIIELAHQMKNGAIPSDLTAPKADRSFIRCQTSQVAEVVRQ
IADNARRKGFAVKDIQVLAPMYRGPAGIDRLNQVLQDLFNPKSEKKRELSVGDVVYRVGDKVLQLVNQPDDNVFNGDIGE
IVAIFYAKENTEKQDLVVVSFDGIEVAYSRQDLSQITHAYCCSIHKSQGSEFPIVILPVVKSYYRMLKRNLLYTAVTRSK
QFLILCGEEEAFKLGVARSDDGSRQTTLTEKLRNSLAPAVEGELPMEDANVGMENVSPYDFMDD

Nucleotide


Download         Length: 2355 bp        

>NTDB_id=93285 MWM02_RS04900 WP_064549734.1 969573..971927(+) (recD2) [Parageobacillus sp. KH3-4]
TTGCAGCAGCCGGAATCATTTGTTTTCGAGGGAACATCGTTTATTAAAGGATCATATATTTCCACCATTTTTCATAATGA
AGCGAATTTGTATTCCGTCGTTCGCGTCCGAGTCGAAGAAACGAACGAAGCGTACGATGAACAAGAAGTTGTTGTAACTG
GATATTTCCCTAAAATGAACGAACATGATACGTATATTTTTTACGGGAAATTTCATGACCATCCAAAGTTCGGTCGGCAA
TATGTCGTAGAACATTTTCGCAAACAATTTCCTAACACAAAAGACGGCATCATTCACTATTTATCAAGCGATTTATTTAA
AGGAATCGGAAAAAAAACGGCAAAAGCGATCGTCGAAGCGCTTGGCGAAAATGCTATTTCCAAAATTTTAGCGGACCCTA
GCGTATTGGATGATGTTCCAAAATTGTCAAAGCAAAGAGCAAAAGAGCTGTATGATACGTTGCGTGCTCATGAAGGGCTG
GAGCAGACGATGATCGCGCTTTCCCAATTTGGTTTTGGTCCGCAGTTGTCGATGAAAATTTATCAAGTATATCAAGATGA
AACACTTTCCGTTATTCAGCAAAACCCCTACCAGCTTGTCGAAGATGTTGAAGGAATCGGATTTGGCCGCGCTGACGAAT
TAGGCTATCGGCTTGGTATTTCCGGCAACCATCCTGCGCGCATTCGCGCTGCGTGTTTGTTTGTGATAGAACGGGATTGC
CTTCAAGAAGGGCATGTGTATGTGACAGAAAGACAGCTCCTCACAAACGTCAAACAGCTTTTGGAGGCGAAACGAAAAGA
AACAGTCAGTGAAGAAGCGATCGAACAAATGTTGTTAATGCTTGCCGAGGAAGGAAAGCTAATCAAGGAAGACGAGAAAT
TTTATATTCCGTCGCTTTATTTCGCCGAAAAGGGAATCGTGGCAAACGTGAAGCGCCTTTTACAGCAAACGGAAGCGGTG
GTGGCGTTTCCGGAATCGGAATTTTTGTTGGCGCTCGGAAGGCTGGAGGAACGTTTATCCGTTCAATACGCTCCCTCGCA
AAAAGAAGCGATTCGACAAGCGCTTTCTTCCCCGCTGTTTATTTTGACCGGAGGCCCTGGTACAGGAAAAACGACAGTAA
TTAAAGGGATCGTGGAAATTTTCGCTGATTTGCACGGTCTTTCCCTCGATCCGAAGGATTACACGAAAGATCATCCATTT
CCGATTTTGCTCGCCGCGCCGACGGGAAGAGCGGCAAAGAGAATGAGCGAGGCAACGGGATTGCCTGCGGTTACGATTCA
TCGTTTACTTGGATGGAATGGGGCGGAAGGTTTTACACATGACGAGGATGAGCCGATTAGCGGCAAGCTTTTAATCGTTG
ATGAAATGTCCATGGTCGATACGTGGCTGGCCAATCAGTTATTTAAGTCGATTCCGGACGGTATGCAAGTGATTCTCGTT
GGCGATGAAGATCAGCTGCCATCTGTCGGACCGGGACAAGTGTTAAAAGATTTATTGCAAGCGGGCGTCATCCCGACCAT
TCGGTTAACTGAAGTATACCGGCAAGCGGAGGGCTCATCGATTATTGAATTGGCGCACCAAATGAAAAACGGGGCCATTC
CCTCGGACTTAACTGCTCCAAAGGCAGACCGCTCATTCATTCGCTGCCAGACTTCACAAGTTGCTGAAGTTGTTCGGCAA
ATTGCCGATAACGCGCGCAGAAAAGGCTTCGCAGTAAAAGACATTCAAGTGCTTGCCCCGATGTATCGCGGTCCTGCTGG
AATCGACCGCCTCAATCAGGTGCTGCAAGATTTGTTTAACCCGAAATCCGAGAAAAAGCGGGAACTTTCTGTTGGCGATG
TCGTATATCGGGTTGGTGATAAGGTGCTGCAGCTTGTCAATCAGCCTGATGACAATGTGTTTAATGGGGACATCGGGGAA
ATTGTCGCCATTTTTTACGCGAAGGAAAATACGGAAAAGCAGGATTTAGTCGTCGTTTCTTTTGATGGCATCGAAGTGGC
GTATTCGCGGCAAGATCTGTCGCAAATTACGCACGCGTACTGCTGTTCGATTCATAAATCGCAAGGGAGCGAATTTCCGA
TTGTCATTTTGCCGGTTGTAAAGAGCTATTATCGCATGTTAAAGAGAAATTTATTATATACGGCTGTGACAAGAAGCAAA
CAATTTTTAATTTTATGCGGCGAAGAAGAGGCGTTTAAATTAGGTGTTGCCCGCAGCGATGATGGCTCTCGGCAAACAAC
GCTGACGGAAAAATTGCGGAACTCTCTTGCCCCTGCTGTAGAGGGAGAACTGCCGATGGAAGACGCGAACGTCGGAATGG
AAAACGTTTCACCGTATGACTTTATGGACGACTAG

Domains

Predicted by InterproScan.

UvrD-like helicase C-terminal domain (UvrD_C_2)

(678-726)

AAA domain (AAA_30)

(343-551)

Helix-hairpin-helix containing domain (HHH_RecD2)

(157-247)

ATP-dependent RecD-like DNA helicase SH3 domain (SH3_13)

(591-659)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A1B7KWI3

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recD2 Bacillus subtilis subsp. subtilis str. 168

63.43

100

0.642

Multiple sequence alignment