NTDB

Overview

Name	xcpW	Type	Machinery gene
Locus tag	V3O04_RS10130	Genome accession	NZ_CP144242
Coordinates	2136003..2136704 (-)	Length	233 a.a.
NCBI ID	WP_000594585.1	Uniprot ID	A0A009Q1Y5
Organism	Acinetobacter baumannii strain SRM3
Function	pseudopilus assembly (predicted from homology) DNA binding and uptake

Genomic Context

Location: 2131003..2141704

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
V3O04_RS10100 (V3O04_10095)	-	2131310..2131753 (-)	444	WP_001246675.1	SRPBCC family protein	-
V3O04_RS10105 (V3O04_10100)	tadA	2131823..2132326 (-)	504	WP_000033177.1	tRNA adenosine(34) deaminase TadA	-
V3O04_RS10110 (V3O04_10105)	-	2132333..2133457 (-)	1125	WP_001983908.1	enoyl-CoA hydratase/isomerase family protein	-
V3O04_RS10115 (V3O04_10110)	ung	2133454..2134167 (-)	714	WP_001177528.1	uracil-DNA glycosylase	-
V3O04_RS10120 (V3O04_10115)	-	2134218..2134814 (-)	597	WP_000908454.1	6-carboxytetrahydropterin synthase	-
V3O04_RS10125 (V3O04_10120)	gspK	2135044..2136003 (-)	960	WP_000301468.1	type II secretion system minor pseudopilin GspK	-
V3O04_RS10130 (V3O04_10125)	xcpW	2136003..2136704 (-)	702	WP_000594585.1	type II secretion system minor pseudopilin GspJ	Machinery gene
V3O04_RS10135 (V3O04_10130)	xcpV	2136704..2137084 (-)	381	WP_254231386.1	type II secretion system minor pseudopilin GspI	Machinery gene
V3O04_RS10140 (V3O04_10135)	-	2137074..2137628 (-)	555	WP_000841373.1	type II secretion system protein	-
V3O04_RS10145 (V3O04_10140)	-	2137638..2138246 (-)	609	WP_000375838.1	TetR/AcrR family transcriptional regulator	-
V3O04_RS10150 (V3O04_10145)	-	2138284..2139057 (-)	774	WP_000497298.1	TatD family hydrolase	-
V3O04_RS10155 (V3O04_10150)	-	2139075..2139416 (-)	342	WP_001183024.1	PilZ domain-containing protein	-
V3O04_RS10160 (V3O04_10155)	-	2139428..2140408 (-)	981	WP_001075416.1	DNA polymerase III subunit delta'	-
V3O04_RS10165 (V3O04_10160)	kdsB	2140420..2141181 (-)	762	WP_000680697.1	3-deoxy-manno-octulosonate cytidylyltransferase	-

Sequence

Protein

Download Length: 233 a.a. Molecular weight: 26595.57 Da Isoelectric Point: 9.5501

                                >NTDB_id=932846 V3O04_RS10130 WP_000594585.1 2136003..2136704(-) (xcpW) [Acinetobacter baumannii strain SRM3]

MIKNKYIHIRSIASRLAARSSSARLTRASGFTLVELLVAIAIFAVLSLLGWKIFDYLLKVRDRNAEHEVHLFELQDAYQQ

ILRDTLQIIPLSANQGGQLHPALEIDNQILRFSKAGVTDPLKQGLSPFERIEYRYDADQKKLYRLKYTNLNTSNREQPLS

STLLSQVDQYQIMVLTPQEVTKWPEVNIDPTKPNELKKLPKGIKIQLTVAGVNYEWIYSLNQGDLSLSQEGNS

Nucleotide

Download Length: 702 bp

                                >NTDB_id=932846 V3O04_RS10130 WP_000594585.1 2136003..2136704(-) (xcpW) [Acinetobacter baumannii strain SRM3]

ATGATAAAAAATAAATATATTCATATCCGAAGCATTGCTTCTCGTCTTGCGGCGCGATCGAGCAGTGCTCGATTAACTCG

CGCCTCAGGATTTACTTTGGTTGAATTGTTAGTCGCGATCGCTATCTTTGCGGTTTTATCTTTATTGGGGTGGAAAATTT

TCGATTACTTGCTCAAAGTTCGTGATCGTAATGCCGAACATGAAGTGCATTTATTTGAATTACAAGATGCTTATCAACAA

ATTCTTCGTGATACTTTGCAGATTATCCCTTTATCCGCAAACCAAGGTGGTCAACTTCATCCAGCTTTAGAAATCGATAA

TCAAATTTTACGTTTTAGCAAAGCAGGCGTAACGGATCCTTTAAAACAAGGCTTATCACCATTTGAACGAATTGAATATC

GTTATGATGCAGATCAAAAAAAACTATATCGTCTTAAATATACAAATTTAAATACTTCGAACAGAGAGCAACCTTTATCG

AGTACTTTGTTAAGTCAAGTCGACCAATATCAGATTATGGTTTTGACTCCGCAAGAAGTCACAAAATGGCCCGAGGTTAA

TATTGATCCAACGAAACCTAATGAGTTAAAAAAATTACCGAAAGGGATAAAAATCCAACTTACAGTCGCTGGTGTAAATT

ATGAATGGATTTATAGCTTAAATCAGGGTGACTTATCGCTTTCACAGGAAGGTAATTCATAA

Domains

Predicted by InterproScan.

Prokaryotic N-terminal methylation motif (N_methyl)

(27-49)

Type II secretion system (T2SS), protein J (T2SSJ)

(83-212)

Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.

3D structure

Source	ID	Structure
AlphaFold DB	A0A009Q1Y5

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.

Visualization of predicted probability:

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	H_a-value
xcpW	Acinetobacter baumannii D1279779	100	100	1

Detailed information NTG0932846