Detailed information    

insolico Bioinformatically predicted

Overview

Name   recJ   Type   Machinery gene
Locus tag   V2B38_RS04170 Genome accession   NZ_CP144224
Coordinates   812975..815344 (+) Length   789 a.a.
NCBI ID   WP_075683111.1    Uniprot ID   A0AAJ2KTH9
Organism   Alkalihalophilus pseudofirmus strain BZ-TG-HK211     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 807975..820344
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  V2B38_RS04140 (V2B38_04140) - 808314..808799 (+) 486 WP_289235910.1 COG2426 family protein -
  V2B38_RS04145 (V2B38_04145) - 808836..809111 (+) 276 WP_022626512.1 post-transcriptional regulator -
  V2B38_RS04150 (V2B38_04150) secD 809265..810569 (+) 1305 WP_323465515.1 protein translocase subunit SecD -
  V2B38_RS04155 (V2B38_04155) secF 810559..811503 (+) 945 WP_022626514.1 protein translocase subunit SecF -
  V2B38_RS04160 (V2B38_04160) - 811628..812527 (+) 900 WP_012957767.1 cation diffusion facilitator family transporter -
  V2B38_RS04165 (V2B38_04165) - 812558..812896 (+) 339 WP_012957768.1 lipopolysaccharide assembly LapA domain-containing protein -
  V2B38_RS04170 (V2B38_04170) recJ 812975..815344 (+) 2370 WP_075683111.1 single-stranded-DNA-specific exonuclease RecJ Machinery gene
  V2B38_RS04175 (V2B38_04175) - 815347..815862 (+) 516 WP_012957770.1 adenine phosphoribosyltransferase -
  V2B38_RS04180 (V2B38_04180) - 816075..818261 (+) 2187 WP_075683110.1 RelA/SpoT family protein -
  V2B38_RS04185 (V2B38_04185) dtd 818286..818726 (+) 441 WP_012957772.1 D-aminoacyl-tRNA deacylase -
  V2B38_RS04190 (V2B38_04190) - 818799..819005 (+) 207 WP_323465516.1 hypothetical protein -

Sequence

Protein


Download         Length: 789 a.a.        Molecular weight: 88553.01 Da        Isoelectric Point: 5.0785

>NTDB_id=932679 V2B38_RS04170 WP_075683111.1 812975..815344(+) (recJ) [Alkalihalophilus pseudofirmus strain BZ-TG-HK211]
MLRPKARWKIQEQDEHKAGRLVSELGVDELVAQLLVNRGIETPEAARTFLYTKEMTYHDPYLLKGMDKAVARIKEAIANQ
EKILIFGDYDADGVSSTSVMIYTLNELGAVFDYYIPNRFTEGYGPNEPALRRAKEEGYSLVVTVDTGISAVHEANVAKEI
DLDFIVTDHHEAPPVLPEAYAIVNPKQPDCTYPFKGLAGVGVAFKVSQALLGRIPKELLDIVVIGTIADLVPLIDENRLM
AKEGLKALESTSKPGLRALMKVCGIGQDALTGDHVGFGIGPRINAAGRLDSADPAVELMITNDSNEAEHLAAEIDSLNKQ
RQSIVNTITEEAVEVVESKYPPDENDVLIIAGAGWNAGVIGIVASRLVERFYRPTIVLSIDEEKGLAKGSARSIEGFDMF
KELSKSRDILPHFGGHPMAAGLTMKESDLNLLRERLNNQAKEVLTEEDFKPLTKIDLSTTVDRISLTVIKQLEALAPFGV
NNPTPKVMLEGVHIDQMRRIGSESNHLKMSFVQNGASLDGIGFHLGHLHDEISQTAKLSAIGTLSINEWNGHVKPQMMLE
DLAVKEWQLFDWRSIKQKRLEDRLMEIPIDDRVLIFFKESTKEELGLQLDDLRKASDLTEMSGGFEGKYVVLLDVPNTRE
ELSLLFKEQGTPSRIYTIFHQQDDSFFTTNPNRDQFKWFYAFLLKRKTFDVKKHGTDLAKHKGWSRHTIDFMSQVFLELG
FVTIDNGVLSLSDAPEKKALDASITYQRKQEQAQIENQFVYSSYEELKQWFNRVIPRNEIDERQIKETV

Nucleotide


Download         Length: 2370 bp        

>NTDB_id=932679 V2B38_RS04170 WP_075683111.1 812975..815344(+) (recJ) [Alkalihalophilus pseudofirmus strain BZ-TG-HK211]
ATGTTAAGACCTAAGGCAAGATGGAAAATCCAAGAACAAGATGAACATAAAGCAGGTAGGCTTGTAAGCGAGCTGGGCGT
TGATGAACTTGTTGCCCAATTATTAGTTAATCGAGGCATAGAGACACCAGAAGCTGCGAGAACTTTTTTATATACAAAGG
AAATGACGTACCATGATCCCTATTTGTTAAAGGGTATGGACAAGGCTGTGGCACGAATTAAAGAAGCCATTGCAAACCAA
GAGAAGATCTTAATATTTGGTGACTATGATGCGGACGGTGTAAGCAGCACCTCTGTTATGATTTACACGTTAAATGAACT
TGGTGCTGTGTTTGATTATTATATTCCTAATCGGTTCACAGAAGGCTACGGGCCTAATGAGCCGGCTTTGAGGCGTGCGA
AAGAAGAGGGGTATTCCTTAGTCGTAACAGTAGATACAGGGATTTCTGCTGTTCACGAGGCGAATGTCGCAAAAGAGATT
GATCTTGATTTTATTGTGACCGACCATCATGAGGCCCCTCCAGTTTTGCCAGAGGCATATGCTATCGTAAACCCGAAGCA
GCCAGATTGTACGTATCCTTTTAAAGGATTAGCTGGTGTAGGGGTTGCGTTCAAAGTGTCACAAGCACTCCTCGGCAGAA
TTCCTAAAGAGCTGCTTGATATTGTTGTTATCGGAACGATTGCTGATCTAGTACCGCTGATTGATGAGAATCGTTTAATG
GCTAAAGAAGGACTGAAGGCCCTAGAATCAACATCGAAGCCAGGGTTGCGTGCTTTGATGAAAGTGTGTGGAATTGGTCA
GGATGCCTTAACGGGCGATCATGTCGGCTTTGGAATTGGACCGCGGATCAATGCTGCAGGAAGACTTGATTCAGCTGATC
CGGCAGTAGAGTTGATGATTACGAATGATTCAAATGAAGCGGAACACCTAGCTGCTGAAATTGATTCTTTAAATAAACAA
CGTCAATCGATTGTTAATACGATTACTGAAGAAGCAGTCGAGGTCGTAGAATCTAAGTATCCTCCAGATGAGAATGATGT
GTTGATCATTGCAGGAGCCGGCTGGAATGCAGGTGTTATTGGGATTGTTGCCTCACGCCTTGTTGAGCGTTTCTATCGTC
CGACAATCGTATTAAGTATTGACGAAGAAAAAGGGTTAGCCAAAGGTTCAGCGAGGAGTATTGAAGGCTTTGATATGTTT
AAAGAATTATCGAAAAGCCGAGATATCCTGCCTCATTTTGGAGGACATCCAATGGCGGCTGGATTGACAATGAAAGAATC
TGATCTTAATTTACTGCGTGAACGTTTAAATAATCAGGCGAAGGAAGTTCTAACTGAGGAAGACTTTAAGCCGCTTACGA
AGATCGATTTATCCACAACGGTAGACCGCATCTCCTTAACGGTGATTAAGCAGTTAGAAGCTCTAGCTCCTTTTGGAGTG
AATAATCCAACACCAAAAGTGATGCTTGAAGGAGTTCATATCGATCAGATGCGCCGTATTGGCAGTGAGTCTAATCATCT
AAAAATGTCTTTTGTTCAAAACGGAGCGAGTCTTGATGGGATTGGCTTTCATTTAGGGCATTTACATGATGAAATCAGTC
AGACGGCAAAGCTCTCTGCGATTGGAACTCTTTCCATCAATGAATGGAATGGACATGTAAAACCGCAGATGATGCTTGAA
GATCTTGCAGTTAAGGAATGGCAGCTTTTTGACTGGCGCAGTATTAAACAAAAGAGGTTAGAAGATCGATTGATGGAAAT
TCCGATTGATGACCGTGTACTTATTTTCTTCAAAGAATCCACGAAAGAAGAGCTCGGACTCCAGCTGGATGACTTGAGAA
AAGCGAGTGATCTGACGGAGATGAGCGGAGGCTTTGAAGGGAAGTATGTGGTATTATTAGATGTGCCTAATACTCGAGAA
GAGCTTTCTCTTTTATTTAAAGAACAAGGAACACCTAGCAGGATTTATACTATTTTTCATCAACAGGACGATTCGTTTTT
TACGACAAATCCAAATCGTGATCAATTTAAATGGTTCTATGCTTTTTTATTAAAGCGTAAAACATTCGATGTGAAAAAAC
ATGGAACAGACCTTGCTAAGCATAAAGGCTGGTCTAGACATACGATCGATTTTATGTCCCAGGTGTTTTTAGAGCTCGGT
TTTGTTACAATAGACAATGGCGTTCTATCTCTAAGTGATGCACCAGAGAAAAAAGCGCTCGATGCGTCAATTACGTATCA
ACGAAAACAAGAGCAAGCACAAATAGAAAATCAATTCGTTTATTCTTCTTATGAGGAATTAAAGCAATGGTTCAATCGCG
TGATTCCCCGAAATGAAATAGATGAACGACAAATCAAGGAGACGGTGTAA

Domains

Predicted by InterproScan.

DHH family (DHH)

(82-226)

DHHA1 domain (DHHA1)

(315-438)

Single-strand DNA-specific exonuclease, C terminal domain (ssDNA-exonuc_C)

(568-771)

RecJ OB domain (RecJ_OB)

(455-561)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recJ Bacillus subtilis subsp. subtilis str. 168

52.874

99.24

0.525