Detailed information NTG0932233

Bioinformatically predicted

Overview

• Name: recD2
• Type: Machinery gene
• Locus tag: VXF94_RS18130
• Genome accession: NZ_CP143956
• Coordinates: 3514643..3517021 (+)
• Length: 792 a.a.
• NCBI ID: WP_014470767.1
• Uniprot ID: -
• Organism: Bacillus amyloliquefaciens strain Fad 108
• Function: homologous recombination (predicted from homology) Homologous recombination

Genomic Context

Location: 3509643..3522021

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
VXF94_RS18105 (VXF94_18105)	-	3509727..3510995 (-)	1269	WP_013353023.1	replication-associated recombination protein A	-
VXF94_RS18110 (VXF94_18110)	cymR	3511190..3511606 (+)	417	WP_013353022.1	cysteine metabolism transcriptional regulator CymR	-
VXF94_RS18115 (VXF94_18115)	-	3511625..3512764 (+)	1140	WP_013353021.1	cysteine desulfurase family protein	-
VXF94_RS18120 (VXF94_18120)	mnmA	3512801..3513916 (+)	1116	WP_013353020.1	tRNA 2-thiouridine(34) synthase MnmA	-
VXF94_RS18125 (VXF94_18125)	-	3514004..3514624 (+)	621	WP_088030693.1	tetratricopeptide repeat protein	-
VXF94_RS18130 (VXF94_18130)	recD2	3514643..3517021 (+)	2379	WP_014470767.1	ATP-dependent RecD-like DNA helicase	Machinery gene
VXF94_RS18135 (VXF94_18135)	-	3517132..3517590 (+)	459	WP_014470766.1	hypothetical protein	-
VXF94_RS18140 (VXF94_18140)	-	3517603..3517794 (+)	192	WP_003152738.1	hypothetical protein	-
VXF94_RS18145 (VXF94_18145)	-	3517816..3517947 (+)	132	WP_003152741.1	YrzQ family protein	-
VXF94_RS18150 (VXF94_18150)	-	3517981..3518637 (-)	657	WP_014470765.1	amino acid ABC transporter permease	-
VXF94_RS18155 (VXF94_18155)	-	3518656..3519306 (-)	651	WP_014470764.1	amino acid ABC transporter permease	-
VXF94_RS18160 (VXF94_18160)	-	3519364..3520191 (-)	828	WP_014470763.1	transporter substrate-binding domain-containing protein	-
VXF94_RS18165 (VXF94_18165)	-	3520212..3520940 (-)	729	WP_014470762.1	amino acid ABC transporter ATP-binding protein	-

Sequence

Protein

• Length: 792 a.a.
• Molecular weight: 88286.04 Da
• Isoelectric Point: 5.0255

>NTDB_id=932233 VXF94_RS18130 WP_014470767.1 3514643..3517021(+) (recD2) [Bacillus amyloliquefaciens strain Fad 108]
MDQLKIEEQPYVKGVIHTVIYHNDTNLYTVLKVKVAETSEAIEDKVVSVTGYFPLLQEDETYTFYGKTATHPKFGLQFQA
EHFKKEIPTTKEGIIHYLSSDLFEGIGKKTAEEIVKKLGDGALNKILADASVLYDVPKMSKKKADKLAGELQRHQGLEQI
MISLNQYGFGPQLSMKIYQAYETETLEKIQENPYQLVKDVEGIGFVKADELGGKMGLSGNHPERIKAAILYTIESTCLSE
GHTYIDTKQLIINTQTLLNQSADGGRVTEMDAADGIIALGESKDIVIEGDRCYFPSLFYAEQNVAKRVLDIAAQTEYADQ
FPESEFLLALGELEERMKVQYAPSQKDAIQKALSSPMLLLTGGPGTGKTTVIKGIVELYSELHGVSLDPGDYKKDEAFPV
LLAAPTGRAAKRMSESTGLPAVTIHRLLGWNGAEGFTYNEDQPIEGKLIIIDEASMLDIWLASHLFKALPKHIQLIVVGD
EDQLPSVGPGQVLRDLLASEVLPTVRLTDIYRQAEGSSIVELAHDMKKGLLPKGLTAPTKDRSFIRCNSAQIKEVVDQVV
SNALKKGYTSRDIQVLAPMYRGKAGINELNILLQDIMNPPKEKRRELKFGDVVYRTGDKILQLVNQPENNVFNGDIGEIV
SIFYAKENTEKEDMVVVSFDGNEITFTKKDFSQFTHAYCCSIHKSQGSEFPIVVLPVVKGYYRMLRRNLLYTAITRAKKF
LILCGEEEALEWGVKNNDATVRQTSLKNRLTEQTEEMDAELAALQKELPFSVYDANIGMEGITPFDFMEEKA

Nucleotide

• Length: 2379 bp

>NTDB_id=932233 VXF94_RS18130 WP_014470767.1 3514643..3517021(+) (recD2) [Bacillus amyloliquefaciens strain Fad 108]
GTGGATCAGCTGAAAATCGAGGAACAACCGTATGTAAAAGGCGTTATTCATACGGTCATTTACCACAATGACACCAACCT
GTATACAGTGCTGAAGGTCAAGGTTGCAGAAACGTCTGAGGCGATCGAAGACAAGGTCGTATCCGTAACGGGCTACTTCC
CTCTGCTGCAAGAAGATGAGACTTACACATTTTACGGAAAAACCGCCACACATCCCAAGTTCGGCCTGCAATTCCAGGCT
GAACACTTTAAAAAAGAAATTCCGACCACCAAAGAAGGGATCATTCACTATTTATCAAGTGATCTGTTTGAAGGAATCGG
AAAAAAAACGGCGGAAGAAATCGTCAAAAAGCTTGGAGACGGCGCGCTGAATAAAATTCTGGCTGATGCGTCGGTGCTTT
ACGATGTGCCGAAAATGTCCAAAAAGAAAGCGGATAAGCTTGCCGGAGAGCTGCAGCGGCATCAGGGGCTGGAGCAGATT
ATGATTTCTCTTAACCAATACGGTTTCGGACCTCAGCTTTCCATGAAAATTTATCAAGCTTACGAAACGGAAACCCTTGA
GAAAATTCAGGAGAATCCTTATCAGCTTGTAAAGGACGTGGAAGGCATCGGCTTTGTAAAAGCCGACGAGCTGGGCGGAA
AAATGGGTCTGTCAGGGAACCATCCCGAGCGGATCAAAGCGGCGATCTTATATACGATTGAATCGACCTGCCTTTCAGAA
GGTCATACTTACATAGACACAAAGCAGCTGATTATCAATACGCAAACGCTACTGAATCAGTCAGCTGACGGAGGCCGCGT
CACGGAAATGGATGCGGCTGACGGCATCATCGCCCTCGGAGAGAGTAAGGACATCGTCATAGAAGGAGACCGCTGCTATT
TTCCGTCTTTGTTTTACGCGGAACAAAATGTCGCAAAACGCGTGCTCGACATTGCGGCTCAGACGGAGTATGCCGATCAA
TTTCCTGAATCGGAATTTCTGCTTGCGCTCGGCGAACTGGAAGAACGGATGAAAGTTCAATACGCTCCGAGCCAAAAGGA
TGCCATTCAAAAAGCGCTGTCGTCGCCGATGCTTTTACTGACCGGAGGACCGGGTACGGGAAAAACGACCGTTATCAAAG
GAATCGTGGAATTATACAGTGAACTCCACGGCGTATCGCTTGATCCCGGTGATTATAAAAAAGACGAGGCGTTTCCGGTG
CTGCTTGCCGCGCCGACCGGAAGAGCCGCAAAACGGATGAGCGAATCTACGGGTCTGCCTGCTGTTACGATTCACAGGCT
GCTCGGCTGGAATGGCGCTGAAGGCTTTACCTACAATGAAGATCAGCCGATTGAAGGGAAACTGATCATTATAGACGAAG
CGAGTATGCTCGATATTTGGCTCGCCAGCCATTTGTTTAAGGCGCTCCCTAAGCACATTCAGCTCATCGTCGTCGGTGAT
GAAGATCAGCTTCCTTCCGTGGGGCCGGGGCAGGTGCTGAGAGACCTTTTGGCTTCTGAGGTGCTGCCGACAGTGCGCCT
GACAGATATTTACCGTCAGGCGGAAGGGTCATCCATCGTCGAACTTGCTCATGATATGAAAAAAGGATTGCTTCCAAAAG
GACTGACCGCGCCGACAAAAGACCGCTCATTTATCCGCTGTAATTCTGCACAGATTAAAGAAGTCGTCGATCAAGTCGTT
TCAAACGCGTTAAAGAAGGGATATACCTCCAGAGATATTCAAGTGCTTGCGCCGATGTACAGGGGAAAAGCGGGAATTAA
CGAGCTGAATATACTTCTTCAAGACATCATGAATCCGCCGAAAGAAAAAAGGCGGGAGCTGAAATTCGGAGATGTCGTCT
ACAGGACGGGCGATAAAATATTGCAGCTTGTCAACCAGCCGGAAAACAATGTGTTTAACGGTGATATCGGCGAAATCGTG
TCCATTTTTTATGCCAAAGAAAATACGGAAAAAGAAGACATGGTCGTCGTCTCGTTTGACGGTAATGAAATCACCTTTAC
GAAAAAGGATTTCAGCCAGTTTACCCATGCTTACTGCTGTTCCATCCACAAGTCTCAGGGAAGTGAATTTCCGATTGTCG
TCCTGCCTGTTGTCAAAGGCTACTATCGAATGCTTAGGAGAAATCTCCTTTATACCGCCATTACAAGGGCCAAGAAATTT
CTGATCCTTTGCGGAGAAGAAGAAGCGCTTGAATGGGGCGTCAAAAACAATGATGCCACCGTCAGACAGACGTCGCTTAA
AAACAGGCTCACAGAGCAGACTGAAGAGATGGATGCAGAACTGGCCGCTCTGCAAAAAGAACTGCCGTTCAGTGTATATG
ATGCCAACATCGGAATGGAAGGCATTACGCCGTTTGACTTTATGGAAGAAAAAGCGTAA

Domains

Predicted by InterproScan.

• Helix-hairpin-helix containing domain (HHH_RecD2) (154-244)

• ATP-dependent RecD-like DNA helicase SH3 domain (SH3_13) (589-659)

• AAA domain (AAA_30) (341-548)

• UvrD-like helicase C-terminal domain (UvrD_C_2) (676-724)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
recD2	Bacillus subtilis subsp. subtilis str. 168	88.748	99.874	0.886