Detailed information    

insolico Bioinformatically predicted

Overview

Name   codY   Type   Regulator
Locus tag   VXF94_RS02310 Genome accession   NZ_CP143956
Coordinates   504601..505380 (-) Length   259 a.a.
NCBI ID   WP_013352252.1    Uniprot ID   -
Organism   Bacillus amyloliquefaciens strain Fad 108     
Function   repression of comK (predicted from homology)   
Competence regulation

Genomic Context

Location: 499601..510380
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  VXF94_RS02280 (VXF94_02280) fliH 499645..500400 (-) 756 WP_013352257.1 flagellar assembly protein FliH -
  VXF94_RS02285 (VXF94_02285) fliG 500393..501409 (-) 1017 WP_013352256.1 flagellar motor switch protein FliG -
  VXF94_RS02290 (VXF94_02290) fliF 501422..503032 (-) 1611 WP_013352255.1 flagellar basal-body MS-ring/collar protein FliF -
  VXF94_RS02295 (VXF94_02295) fliE 503075..503395 (-) 321 WP_007409777.1 flagellar hook-basal body complex protein FliE -
  VXF94_RS02300 (VXF94_02300) flgC 503406..503858 (-) 453 WP_013352254.1 flagellar basal body rod protein FlgC -
  VXF94_RS02305 (VXF94_02305) flgB 503858..504247 (-) 390 WP_013352253.1 flagellar basal body rod protein FlgB -
  VXF94_RS02310 (VXF94_02310) codY 504601..505380 (-) 780 WP_013352252.1 GTP-sensing pleiotropic transcriptional regulator CodY Regulator
  VXF94_RS02315 (VXF94_02315) hslU 505418..506821 (-) 1404 WP_014470401.1 HslU--HslV peptidase ATPase subunit -
  VXF94_RS02320 (VXF94_02320) hslV 506838..507383 (-) 546 WP_013352250.1 ATP-dependent protease subunit HslV -
  VXF94_RS02325 (VXF94_02325) xerC 507399..508316 (-) 918 WP_013352249.1 tyrosine recombinase XerC -
  VXF94_RS02330 (VXF94_02330) trmFO 508386..509693 (-) 1308 WP_013352248.1 FADH(2)-oxidizing methylenetetrahydrofolate--tRNA-(uracil(54)-C(5))- methyltransferase TrmFO -

Sequence

Protein


Download         Length: 259 a.a.        Molecular weight: 29028.23 Da        Isoelectric Point: 4.6017

>NTDB_id=932182 VXF94_RS02310 WP_013352252.1 504601..505380(-) (codY) [Bacillus amyloliquefaciens strain Fad 108]
MALLQKTRIINSMLQAAAGKPVNFKEMAETLRDVIDSNIFVVSRRGKLLGYSINQQIENDRMKKMLEDRQFPEEYTKNLF
NVPETSSNLDINSEYTAFPVENRDLFQAGLTTIVPIIGGGERLGTLILSRLQDQFEDDDLILAEYGATVVGMEILREKAE
EIEEEARSKAVVQMAISSLSYSELEAIEHIFEELDGNEGLLVASKIADRVGITRSVIVNALRKLESAGVIESRSLGMKGT
YIKVLNNKFLIELENLKSH

Nucleotide


Download         Length: 780 bp        

>NTDB_id=932182 VXF94_RS02310 WP_013352252.1 504601..505380(-) (codY) [Bacillus amyloliquefaciens strain Fad 108]
ATGGCTTTACTACAAAAAACACGAATTATTAACAGCATGTTGCAGGCTGCGGCAGGCAAACCCGTAAACTTTAAAGAAAT
GGCTGAAACGCTTCGTGACGTCATTGATTCTAATATTTTCGTCGTCAGCCGCAGAGGAAAGCTTTTAGGCTACTCTATTA
ATCAGCAGATCGAAAATGACCGCATGAAAAAAATGCTGGAAGACCGCCAGTTCCCGGAAGAGTACACGAAAAATCTGTTC
AACGTTCCGGAGACGTCTTCAAACCTTGATATCAACAGTGAATACACGGCATTTCCTGTTGAAAACAGAGACCTGTTCCA
GGCAGGCTTAACGACGATTGTCCCGATTATCGGCGGAGGCGAGCGTCTGGGCACATTGATTCTGTCCCGTCTGCAGGATC
AATTTGAAGATGATGATCTCATTCTTGCTGAATACGGAGCAACCGTTGTAGGAATGGAGATTTTAAGAGAAAAAGCGGAA
GAAATCGAAGAAGAAGCACGAAGCAAAGCAGTCGTTCAAATGGCGATCAGTTCTCTGTCTTACAGTGAACTTGAAGCGAT
TGAGCATATCTTTGAAGAACTTGACGGAAACGAAGGCTTGCTTGTGGCAAGTAAGATTGCGGACCGTGTGGGCATTACGC
GTTCAGTAATCGTTAACGCGCTGAGAAAGCTGGAAAGCGCCGGCGTCATTGAATCCAGATCACTGGGAATGAAGGGAACT
TACATTAAAGTTCTGAACAACAAATTCCTTATTGAATTGGAAAATCTTAAATCACATTAA

Domains

Predicted by InterproScan.

CodY GAF-like domain (CodY)

(3-178)

CodY helix-turn-helix domain (HTH_CodY)

(198-255)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  codY Bacillus subtilis subsp. subtilis str. 168

99.614

100

0.996
  codY Lactococcus lactis subsp. lactis strain DGCC12653

47.451

98.456

0.467