Detailed information    

insolico Bioinformatically predicted

Overview

Name   rcrQ   Type   Regulator
Locus tag   V3C14_RS11760 Genome accession   NZ_CP143947
Coordinates   2292192..2294045 (-) Length   617 a.a.
NCBI ID   WP_015516659.1    Uniprot ID   -
Organism   Agathobacter rectalis strain DFI.5.28     
Function   regulate competence (predicted from homology)   
Competence regulation

Genomic Context

Location: 2287192..2299045
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  V3C14_RS11745 (V3C14_11800) - 2288840..2289733 (+) 894 WP_012743004.1 DUF5688 family protein -
  V3C14_RS11750 (V3C14_11805) glgA 2289862..2291313 (-) 1452 WP_012743005.1 glycogen synthase GlgA -
  V3C14_RS20090 (V3C14_11810) - 2291482..2291826 (-) 345 Protein_2276 sporulation initiation factor Spo0A C-terminal domain-containing protein -
  V3C14_RS11760 (V3C14_11815) rcrQ 2292192..2294045 (-) 1854 WP_015516659.1 ABC transporter ATP-binding protein Regulator
  V3C14_RS11765 (V3C14_11820) - 2294047..2296224 (-) 2178 WP_306785004.1 ABC transporter ATP-binding protein -

Sequence

Protein


Download         Length: 617 a.a.        Molecular weight: 68489.28 Da        Isoelectric Point: 6.9417

>NTDB_id=932144 V3C14_RS11760 WP_015516659.1 2292192..2294045(-) (rcrQ) [Agathobacter rectalis strain DFI.5.28]
MSENNNEQFKMPPKRPRGPMGRGPGMVTEKARDFKGSTKKLIKYLGRYWAAIIAVMIFAAVSTVFSVAGPKVMGKATTAL
AEGLMNKIAGTGGIDFDYIAKVLLFTLALYVVSAIFMFVQGLIMTGITQKTCYRMRKDITSKINRMPMKYFESRTYGEVL
SRITNDVDTLGQSLNQSITQIITSVATLVGTLVMMLSISPLMTLISLVILPVSMILISFVIKHSQKYFRQQQEYLGHING
QVEEVYGGHLVIKAYNKEAETVKTFKEANNVLYKSAWKSQFLSGLMMPIMQFVGNLGYAGVAISGGILAIKNVITIGDIQ
AFIQYVKNFTQPIQQIAQVANQLQSMAAASERVFEFLEEEEEDITVENPVKPDHIEGSVEFSHVHFGYNPDQIIINDFSA
KVKPGQQVAIVGPTGAGKTTMVKLLMRFYDVSSGAILVDGHDIRDYNRADLRDAFGMVLQDTWLFKGTIMENIRYGRLDA
TDEEVIAAAKAAHAHHFIQTLPGGYDMELNEDASNVSQGQKQLLTIARAILADNPILILDEATSSVDTRTEIRIQKALDN
LMKGRTSFVIAHRLSTIKNADMILVMKDGDIIEQGTHDELLAKNGFYAELYNSQFEE

Nucleotide


Download         Length: 1854 bp        

>NTDB_id=932144 V3C14_RS11760 WP_015516659.1 2292192..2294045(-) (rcrQ) [Agathobacter rectalis strain DFI.5.28]
ATGAGTGAGAATAATAACGAACAGTTTAAGATGCCTCCTAAGAGGCCAAGAGGGCCAATGGGACGTGGCCCCGGAATGGT
CACAGAAAAGGCCAGGGATTTCAAGGGCTCTACAAAGAAACTCATAAAGTATCTCGGCAGATACTGGGCTGCTATCATTG
CAGTTATGATTTTTGCAGCAGTTTCGACTGTCTTCTCCGTTGCAGGACCGAAGGTCATGGGTAAAGCCACCACTGCGCTT
GCCGAGGGACTCATGAACAAGATTGCGGGAACAGGCGGCATAGATTTTGATTATATTGCAAAGGTTCTTTTGTTTACGCT
GGCTTTATATGTGGTGAGTGCCATCTTTATGTTTGTCCAGGGGCTTATCATGACAGGCATCACGCAGAAGACCTGCTATA
GGATGCGTAAGGACATCACGAGCAAAATCAACCGTATGCCGATGAAGTATTTCGAGTCAAGGACATACGGTGAGGTACTT
TCGCGTATCACAAACGACGTGGACACACTCGGACAGAGCTTGAACCAGAGTATCACACAGATTATTACATCTGTTGCCAC
TTTGGTCGGTACACTGGTCATGATGCTGTCTATTTCACCGCTCATGACGCTGATTTCACTCGTTATCCTGCCAGTTTCGA
TGATACTTATTTCGTTTGTCATAAAGCATTCACAGAAATACTTCAGACAGCAGCAGGAGTATCTGGGACACATAAACGGA
CAGGTCGAGGAGGTGTACGGAGGCCACCTCGTCATAAAGGCATATAATAAAGAGGCAGAGACTGTAAAGACCTTTAAGGA
GGCCAACAATGTGCTCTACAAATCCGCTTGGAAATCGCAGTTTCTCTCAGGACTTATGATGCCTATCATGCAGTTTGTAG
GAAACTTAGGATACGCGGGAGTTGCCATCTCAGGAGGTATACTTGCCATAAAGAATGTCATCACAATCGGTGATATCCAG
GCCTTTATACAGTATGTGAAGAATTTCACACAGCCTATCCAGCAGATAGCGCAGGTGGCAAACCAGCTTCAGTCGATGGC
GGCTGCATCTGAGCGTGTATTTGAGTTCCTCGAGGAGGAGGAAGAGGATATAACAGTGGAAAATCCTGTAAAGCCAGACC
ATATCGAGGGAAGTGTAGAGTTTTCGCATGTACACTTTGGTTATAATCCTGACCAGATCATCATCAATGATTTTTCTGCA
AAGGTAAAGCCGGGACAGCAGGTTGCTATCGTTGGACCGACAGGAGCGGGAAAGACTACCATGGTCAAGCTTCTTATGAG
ATTTTATGATGTAAGCTCAGGTGCCATTCTTGTAGACGGACATGATATCAGGGATTACAACAGAGCCGATCTGCGAGATG
CATTCGGCATGGTATTGCAGGACACATGGCTCTTTAAGGGCACCATTATGGAAAATATCCGCTACGGCCGTCTGGATGCC
ACAGATGAGGAGGTCATCGCGGCAGCAAAGGCAGCACATGCGCATCACTTTATCCAGACATTGCCGGGTGGCTACGATAT
GGAGCTCAACGAGGATGCATCCAATGTGTCACAGGGACAAAAGCAGCTTTTGACAATAGCAAGAGCCATTCTTGCAGACA
ATCCAATCCTTATCCTTGATGAGGCCACATCCTCTGTCGATACACGTACAGAAATCCGTATCCAGAAGGCACTCGACAAT
CTGATGAAGGGCAGAACAAGCTTTGTGATCGCCCACAGGCTGTCTACTATCAAGAATGCCGATATGATTCTTGTCATGAA
GGACGGAGACATTATCGAGCAGGGTACACACGATGAGCTTCTTGCAAAGAACGGATTTTACGCAGAGCTGTATAACTCTC
AGTTTGAAGAATAG

Domains

Predicted by InterproScan.

ABC transporter (ABC_tran)

(396-544)

ABC transporter transmembrane region (ABC_membrane)

(52-332)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rcrQ Streptococcus mutans UA159

51.115

94.489

0.483