Detailed information    

insolico Bioinformatically predicted

Overview

Name   rcrQ   Type   Regulator
Locus tag   V3C17_RS00460 Genome accession   NZ_CP143938
Coordinates   122195..124027 (+) Length   610 a.a.
NCBI ID   WP_065446612.1    Uniprot ID   -
Organism   Bifidobacterium pseudocatenulatum strain DFI.7.61     
Function   regulate competence (predicted from homology)   
Competence regulation

Genomic Context

Location: 117195..129027
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  V3C17_RS00440 (V3C17_00440) thiS 117507..117701 (-) 195 WP_055062916.1 sulfur carrier protein ThiS -
  V3C17_RS00445 (V3C17_00445) - 118257..119309 (+) 1053 WP_237919511.1 aldo/keto reductase -
  V3C17_RS00450 (V3C17_00450) - 119426..119920 (+) 495 WP_022244787.1 MarR family winged helix-turn-helix transcriptional regulator -
  V3C17_RS00455 (V3C17_00455) - 120226..122193 (+) 1968 WP_081291320.1 ABC transporter ATP-binding protein -
  V3C17_RS00460 (V3C17_00460) rcrQ 122195..124027 (+) 1833 WP_065446612.1 ABC transporter ATP-binding protein Regulator
  V3C17_RS00465 (V3C17_00465) - 124113..125081 (-) 969 WP_226562739.1 FAD:protein FMN transferase -
  V3C17_RS00470 (V3C17_00470) - 125188..126594 (+) 1407 WP_414017761.1 MFS transporter -
  V3C17_RS00475 (V3C17_00475) - 126987..128750 (+) 1764 WP_368734650.1 FTR1 family protein -

Sequence

Protein


Download         Length: 610 a.a.        Molecular weight: 66607.16 Da        Isoelectric Point: 5.9497

>NTDB_id=932118 V3C17_RS00460 WP_065446612.1 122195..124027(+) (rcrQ) [Bifidobacterium pseudocatenulatum strain DFI.7.61]
MPGGPMGRGRGAVEKPQDFGGVMKKLVHFCRHYIPAIIVALVLGAIGTVCQIVGPDKLKDMTNEIAKGLPALVNGKPVLG
AIDMDAVTHIAWLLVALYVGYAVLCYVQSWMMANVTQRTAQELREAISVKINKLPLKYFDKVSYGDVLSRITNDVDAIGQ
TLGQSVGSLITSVTLFVGALIMMFYNNVIMTVCAIASSLVGLLIMGAIMKVSQKYFSRQQIALGDVNGHVEEMYAGHTVV
KAYCGEADSIRAFEKYNGDLYDSGWKSQFLSGLMMPLMNFVGNFGYVVVCVVGAVLAMDGKIEFGVIVAFMMYIRLFTQP
LSQFAQAFQNLQRCAAASERVFSFLEEPEMADESDKQALLGVNGKPVRGDVEFSHVKFGYDPSKTIINDFSASVKSGQKV
AIVGPTGAGKTTMVNLLMRFYEISGGSIAIDGVDTKSVPRWNVHDQFSMVLQDTWVFRGTVRENIAYSKPGVTDKQIEDA
CKAVGLHHYIMSLPNGYDTVLDDKATLSQGQKQLLTIARAMVEDAPILILDEATSSVDTRTEELIQKAMDALTVDRTSFV
IAHRLSTIRDADMILVMNHGDIVESGTHEELLAKGGFYADIYNSQFALTD

Nucleotide


Download         Length: 1833 bp        

>NTDB_id=932118 V3C17_RS00460 WP_065446612.1 122195..124027(+) (rcrQ) [Bifidobacterium pseudocatenulatum strain DFI.7.61]
ATGCCAGGAGGACCTATGGGACGCGGCCGCGGAGCCGTTGAAAAACCGCAGGATTTCGGTGGTGTGATGAAGAAACTGGT
GCATTTCTGCCGCCACTACATTCCCGCCATCATTGTGGCGCTCGTATTGGGCGCGATCGGCACGGTATGCCAGATCGTCG
GTCCGGACAAGCTCAAGGACATGACCAACGAGATCGCCAAAGGCCTGCCTGCGCTAGTCAATGGCAAGCCGGTGCTCGGT
GCGATCGACATGGACGCGGTCACGCACATCGCATGGCTGCTGGTGGCGCTGTATGTGGGGTACGCGGTGCTGTGCTACGT
GCAAAGCTGGATGATGGCGAACGTCACGCAGCGCACCGCACAGGAGCTGCGCGAAGCCATCAGCGTGAAGATCAACAAGC
TGCCGCTCAAGTATTTCGACAAGGTCAGCTACGGCGATGTGCTCAGCCGCATCACCAACGATGTGGACGCCATCGGCCAG
ACGCTCGGCCAGTCGGTCGGCTCGCTGATCACGTCGGTCACGCTGTTCGTGGGCGCGCTCATCATGATGTTCTACAACAA
TGTGATTATGACGGTGTGCGCCATCGCTTCTAGCCTGGTCGGTCTGCTCATCATGGGCGCAATCATGAAGGTTTCGCAGA
AGTACTTCTCCCGTCAGCAGATCGCATTGGGCGATGTCAACGGTCACGTCGAAGAGATGTACGCCGGCCACACCGTGGTC
AAGGCGTATTGCGGCGAGGCTGATTCGATTCGCGCGTTCGAAAAGTACAACGGCGATTTGTACGATTCGGGATGGAAGAG
CCAGTTCCTTTCCGGCCTGATGATGCCGTTGATGAATTTCGTCGGCAATTTCGGCTACGTGGTTGTGTGCGTGGTTGGCG
CTGTGCTTGCGATGGATGGCAAGATCGAGTTTGGTGTGATCGTTGCGTTCATGATGTACATTCGACTGTTCACCCAGCCG
CTTTCCCAGTTCGCGCAGGCATTCCAGAACCTGCAGCGTTGCGCGGCCGCTTCCGAGCGCGTGTTCAGCTTCCTTGAAGA
GCCGGAGATGGCCGACGAATCCGACAAGCAGGCGCTGCTCGGCGTGAACGGCAAACCGGTGCGCGGTGACGTTGAGTTCA
GTCATGTGAAGTTCGGTTACGATCCGAGCAAGACGATCATCAACGATTTCTCCGCTTCGGTGAAGTCCGGTCAGAAGGTT
GCGATTGTTGGTCCGACCGGTGCCGGCAAGACCACGATGGTGAATCTGCTGATGCGTTTCTATGAGATTTCGGGCGGTTC
GATTGCGATTGATGGTGTGGATACGAAGTCCGTGCCACGCTGGAACGTGCATGACCAGTTCTCCATGGTATTGCAGGATA
CGTGGGTGTTCCGTGGAACAGTGCGTGAAAACATCGCGTATTCGAAGCCGGGCGTCACCGACAAGCAGATCGAGGACGCA
TGCAAGGCCGTGGGGCTGCACCACTACATCATGTCGCTGCCGAATGGCTATGACACAGTGCTTGACGACAAGGCCACGCT
TTCGCAGGGTCAGAAGCAGTTGCTCACCATTGCGCGAGCCATGGTTGAGGATGCGCCGATTCTGATTCTCGACGAGGCCA
CCTCTTCGGTCGATACGCGTACGGAAGAGCTGATTCAGAAGGCCATGGACGCGCTGACCGTGGACCGTACGTCGTTCGTG
ATCGCGCACCGTCTGTCCACCATCCGCGATGCGGACATGATTTTGGTCATGAACCATGGCGACATCGTGGAAAGCGGTAC
GCATGAGGAGCTGCTCGCCAAAGGCGGTTTCTACGCCGACATTTACAACAGCCAGTTCGCCCTCACCGACTGA

Domains

Predicted by InterproScan.

ABC transporter transmembrane region (ABC_membrane)

(38-321)

ABC transporter (ABC_tran)

(388-535)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rcrQ Streptococcus mutans UA159

53.333

95.902

0.511