Detailed information    

insolico Bioinformatically predicted

Overview

Name   ceuB   Type   Machinery gene
Locus tag   VY686_RS05340 Genome accession   NZ_CP143870
Coordinates   1146745..1147698 (+) Length   317 a.a.
NCBI ID   WP_011948718.1    Uniprot ID   A0A0M1LA37
Organism   Clostridium botulinum A strain RFBIO-Honey-B6     
Function   DNA uptake (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1141745..1152698
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  VY686_RS05315 - 1141866..1142102 (+) 237 WP_011948713.1 SHOCT domain-containing protein -
  VY686_RS05320 - 1142372..1143073 (+) 702 WP_011948714.1 response regulator transcription factor -
  VY686_RS05325 - 1143073..1144479 (+) 1407 WP_011948715.1 HAMP domain-containing sensor histidine kinase -
  VY686_RS05330 - 1144819..1145505 (-) 687 WP_011948716.1 DNA alkylation repair protein -
  VY686_RS05335 - 1145741..1146499 (-) 759 WP_011948717.1 AraC family transcriptional regulator -
  VY686_RS05340 ceuB 1146745..1147698 (+) 954 WP_011948718.1 ABC transporter permease Machinery gene
  VY686_RS05345 - 1147688..1148638 (+) 951 WP_011948719.1 iron chelate uptake ABC transporter family permease subunit -
  VY686_RS05350 - 1148635..1149390 (+) 756 WP_011948720.1 ATP-binding cassette domain-containing protein -
  VY686_RS05355 - 1149464..1150408 (+) 945 WP_011948721.1 siderophore ABC transporter substrate-binding protein -
  VY686_RS05360 - 1150610..1151611 (+) 1002 WP_011986199.1 AraC family transcriptional regulator -

Sequence

Protein


Download         Length: 317 a.a.        Molecular weight: 34889.26 Da        Isoelectric Point: 9.9543

>NTDB_id=931608 VY686_RS05340 WP_011948718.1 1146745..1147698(+) (ceuB) [Clostridium botulinum A strain RFBIO-Honey-B6]
MKKRYLILALIILSICSIFIGVKDISFIDIFNSDDVKLKVLLISRIPRLISIIVVGVSMSIAGLIMQQISRNKFVSPDTA
STIDSAKLGVLVALMIFPSATLTEKMIVSFIFSLLGTFLFMKILKKIKVKNSIFIPLVGIMLGNIIDSITTFFAYKYDLI
QSIASWLQGDFSLIIKGNYELIYFSLPLVVIAFIYANKFTVAGMGEDFSKNLGVNYNRIINIGLVIVALISSLVVITVGK
IPFLGLIVPNIVTLYKGDNLKNSLCSTALLGAVFLLGCDILGRLVIYPYEISIGLVVGVIGSMVFLYLLFRRNGNEV

Nucleotide


Download         Length: 954 bp        

>NTDB_id=931608 VY686_RS05340 WP_011948718.1 1146745..1147698(+) (ceuB) [Clostridium botulinum A strain RFBIO-Honey-B6]
ATGAAAAAGAGATATTTAATTTTAGCATTAATTATTTTATCTATTTGTTCAATATTTATTGGAGTAAAAGATATTAGCTT
TATAGATATATTTAATTCAGATGATGTGAAGCTTAAGGTATTATTAATTAGTAGAATCCCAAGACTTATAAGTATTATTG
TAGTAGGGGTTAGTATGAGTATAGCAGGACTTATTATGCAACAAATAAGTCGAAATAAATTTGTATCTCCAGATACAGCT
TCAACTATAGATAGTGCAAAGCTTGGGGTTTTAGTTGCTTTAATGATATTTCCTTCAGCAACTCTTACTGAAAAAATGAT
AGTTTCCTTTATATTTTCTTTATTAGGTACATTCTTATTTATGAAAATTTTAAAGAAAATAAAAGTTAAAAATTCTATCT
TCATACCACTCGTAGGTATAATGCTTGGAAATATAATAGATTCAATAACTACGTTTTTTGCATATAAATATGATCTTATT
CAAAGTATTGCCTCTTGGCTTCAAGGTGATTTTTCTTTAATTATTAAAGGAAATTATGAACTTATATATTTTAGTCTACC
ACTTGTAGTCATAGCCTTTATTTATGCTAACAAATTCACAGTAGCAGGTATGGGAGAGGATTTTTCTAAGAATTTAGGTG
TTAATTATAACAGAATCATAAATATAGGACTTGTAATAGTAGCATTAATATCTTCACTAGTAGTTATTACTGTAGGAAAA
ATACCATTCCTAGGTCTTATAGTACCTAATATAGTTACTCTTTATAAAGGGGATAATTTAAAAAATAGTCTTTGTAGTAC
AGCATTGCTTGGAGCAGTATTTCTCTTAGGCTGTGACATATTAGGTAGGTTAGTTATTTATCCCTATGAGATATCTATAG
GACTTGTAGTTGGAGTTATAGGAAGTATGGTATTCCTTTATCTCTTGTTTAGGAGGAATGGCAATGAAGTGTAG

Domains

Predicted by InterproScan.

FecCD transport family (FecCD)

(10-311)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A0M1LA37

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ceuB Campylobacter jejuni subsp. jejuni 81-176

51.125

98.107

0.502