Detailed information    

insolico Bioinformatically predicted

Overview

Name   comM   Type   Machinery gene
Locus tag   R8612_RS08135 Genome accession   NZ_AP028351
Coordinates   1589710..1591215 (+) Length   501 a.a.
NCBI ID   WP_002778536.1    Uniprot ID   A0ABP2NPV3
Organism   Campylobacter coli strain BCH-10460     
Function   interact with DprA (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1584710..1596215
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  R8612_RS08110 (B10460_15940) fliI 1585171..1586556 (-) 1386 WP_002798073.1 flagellar protein export ATPase FliI -
  R8612_RS08115 (B10460_15950) folE 1586556..1587128 (-) 573 WP_002792738.1 GTP cyclohydrolase I FolE -
  R8612_RS08120 (B10460_15960) tig 1587249..1588574 (+) 1326 WP_072240866.1 trigger factor -
  R8612_RS08125 (B10460_15970) clpP 1588574..1589158 (+) 585 WP_002783575.1 ATP-dependent Clp endopeptidase proteolytic subunit ClpP -
  R8612_RS08130 (B10460_15980) def 1589186..1589713 (+) 528 WP_002778535.1 peptide deformylase -
  R8612_RS08135 (B10460_15990) comM 1589710..1591215 (+) 1506 WP_002778536.1 YifB family Mg chelatase-like AAA ATPase Machinery gene
  R8612_RS08140 (B10460_16000) - 1591217..1591915 (+) 699 WP_002778537.1 NYN domain-containing protein -
  R8612_RS08145 (B10460_16010) - 1591899..1593269 (+) 1371 WP_002783577.1 bifunctional ADP-dependent NAD(P)H-hydrate dehydratase/NAD(P)H-hydrate epimerase -
  R8612_RS08150 (B10460_16020) purN 1593260..1593835 (+) 576 WP_002778539.1 phosphoribosylglycinamide formyltransferase -
  R8612_RS08155 (B10460_16030) - 1593973..1594209 (-) 237 WP_002778540.1 hypothetical protein -
  R8612_RS08160 (B10460_16040) - 1594375..1595091 (-) 717 WP_002778541.1 ankyrin repeat domain-containing protein -
  R8612_RS08165 (B10460_16050) - 1595232..1595972 (+) 741 WP_002778542.1 TerC family protein -

Sequence

Protein


Download         Length: 501 a.a.        Molecular weight: 56608.64 Da        Isoelectric Point: 8.7459

>NTDB_id=93154 R8612_RS08135 WP_002778536.1 1589710..1591215(+) (comM) [Campylobacter coli strain BCH-10460]
MKKLKCVSFDENLDIIDVESTFTRGLPNLSIVGLANIAIKESIERIKATLLTCNFSFPAKKITINLSPSGIPKKGSHFDL
VIATLILLQNEDFDDFFVVGELGLDGSIKSTNELFSLLLFLSTKVKSAKVVVPKNIALKASMIPNLEIYGLEHLNEVIEF
FKEKNYEKFKFTQSHPLFANPLIIENEIFIKNHHFELDFKDIKGQEKAKRACLIAALGMHNILFEGSPGSGKSMCAKRLV
EIMPPQSLNEVLMQNAYMSLNSKDCEFTQKRALRHPHHTSTRASIFGGGAKNAKIGEIALANGGVLFFDEFPHFNKQIIE
SLREPLEDHKIHISRVNSKTTYETKFSFVAAQNPCPCGNLFSKNLSCVCSENEIKRYKNHISAPIMDRIDLYVAMDEISK
DDKSSINSKEMSERILKAFIFGKKRGQKEFNGKLNDTELQKFCILEKDAKDTLDLAISRYNLSQRALNKILKVSRSIADF
EEKELLSKNHILEALSFRMRS

Nucleotide


Download         Length: 1506 bp        

>NTDB_id=93154 R8612_RS08135 WP_002778536.1 1589710..1591215(+) (comM) [Campylobacter coli strain BCH-10460]
ATGAAAAAATTAAAATGTGTAAGCTTTGATGAGAATTTAGATATCATCGATGTAGAGTCTACATTTACAAGAGGCTTACC
TAATTTAAGCATAGTCGGACTTGCAAATATTGCAATTAAAGAAAGTATCGAGCGTATCAAAGCCACACTTTTAACTTGCA
ATTTTTCATTTCCTGCTAAAAAAATCACCATCAATCTTAGCCCTTCAGGAATTCCAAAAAAAGGTTCTCATTTTGATTTA
GTTATCGCTACGCTTATATTGTTGCAAAATGAAGACTTTGATGATTTTTTTGTGGTAGGCGAGCTTGGTCTTGATGGAAG
TATCAAAAGCACCAATGAGCTTTTTTCTTTACTTTTATTTTTATCCACAAAGGTAAAAAGTGCAAAAGTTGTAGTCCCAA
AAAATATAGCTCTAAAAGCTTCTATGATACCCAATCTAGAAATTTATGGACTTGAGCATTTAAATGAAGTGATTGAATTT
TTTAAAGAAAAAAACTATGAGAAATTCAAATTCACCCAAAGCCATCCTTTATTTGCAAATCCTTTGATTATAGAAAATGA
AATTTTTATTAAAAATCATCATTTTGAACTTGATTTTAAAGATATCAAAGGACAAGAAAAAGCTAAAAGAGCTTGTTTGA
TAGCAGCACTAGGTATGCACAATATACTTTTTGAAGGAAGTCCAGGAAGTGGCAAAAGTATGTGTGCAAAACGCCTTGTT
GAAATCATGCCTCCACAAAGTTTAAATGAGGTTTTAATGCAAAATGCTTATATGTCTTTAAATTCTAAAGATTGCGAATT
TACGCAAAAAAGAGCCTTAAGACACCCTCATCATACCTCTACAAGAGCTAGTATTTTTGGTGGTGGAGCAAAAAATGCGA
AGATAGGTGAAATCGCTCTAGCTAATGGTGGAGTTTTATTTTTTGATGAATTTCCTCATTTTAACAAACAGATTATCGAA
AGTCTAAGAGAACCTCTAGAAGATCATAAAATTCATATTTCAAGAGTCAATTCAAAAACCACTTATGAAACCAAATTCAG
TTTTGTTGCCGCTCAAAATCCTTGTCCTTGTGGAAATTTATTTTCTAAAAATCTGTCTTGCGTTTGTAGTGAAAATGAGA
TTAAAAGGTATAAAAATCACATTTCAGCCCCTATTATGGATAGAATTGATCTTTATGTAGCTATGGATGAGATCAGCAAA
GATGATAAGTCAAGTATAAATTCAAAAGAAATGAGTGAAAGAATTTTAAAGGCTTTTATCTTTGGCAAAAAACGCGGCCA
AAAAGAATTTAATGGCAAATTAAATGATACAGAATTGCAAAAATTTTGTATTTTAGAAAAAGATGCCAAGGATACTTTGG
ATTTAGCCATTTCGCGTTATAATCTTTCACAAAGAGCTTTAAATAAAATTTTAAAAGTTTCAAGATCTATTGCAGATTTT
GAAGAAAAAGAACTTCTTAGTAAAAATCATATTTTAGAAGCTTTGAGTTTTAGGATGAGGAGTTAA

Domains

Predicted by InterProScan.

Magnesium chelatase, subunit ChlI (Mg_chelatase)

(198-400)

Subunit ChlI of Mg-chelatase (ChlI)

(18-135)

Magnesium chelatase, subunit ChlI C-terminal (Mg_chelatase_C)

(407-498)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comM Helicobacter pylori 26695

46.293

99.601

0.461

Multiple sequence alignment