Detailed information    

insolico Bioinformatically predicted

Overview

Name   codY   Type   Regulator
Locus tag   U6C02_RS16595 Genome accession   NZ_CP143843
Coordinates   3316274..3317053 (-) Length   259 a.a.
NCBI ID   WP_003154263.1    Uniprot ID   I2C545
Organism   Bacillus velezensis strain YM-3     
Function   repression of comK (predicted from homology)   
Competence regulation

Genomic Context

Location: 3311274..3322053
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  U6C02_RS16565 (U6C02_16565) fliH 3311318..3312073 (-) 756 WP_025851275.1 flagellar assembly protein FliH -
  U6C02_RS16570 (U6C02_16570) fliG 3312066..3313082 (-) 1017 WP_003154256.1 flagellar motor switch protein FliG -
  U6C02_RS16575 (U6C02_16575) fliF 3313095..3314705 (-) 1611 WP_003154257.1 flagellar basal-body MS-ring/collar protein FliF -
  U6C02_RS16580 (U6C02_16580) fliE 3314748..3315068 (-) 321 WP_007409777.1 flagellar hook-basal body complex protein FliE -
  U6C02_RS16585 (U6C02_16585) flgC 3315079..3315531 (-) 453 WP_003154259.1 flagellar basal body rod protein FlgC -
  U6C02_RS16590 (U6C02_16590) flgB 3315531..3315920 (-) 390 WP_003154260.1 flagellar basal body rod protein FlgB -
  U6C02_RS16595 (U6C02_16595) codY 3316274..3317053 (-) 780 WP_003154263.1 GTP-sensing pleiotropic transcriptional regulator CodY Regulator
  U6C02_RS16600 (U6C02_16600) hslU 3317091..3318494 (-) 1404 WP_014305002.1 HslU--HslV peptidase ATPase subunit -
  U6C02_RS16605 (U6C02_16605) hslV 3318511..3319056 (-) 546 WP_003154267.1 ATP-dependent protease subunit HslV -
  U6C02_RS16610 (U6C02_16610) xerC 3319072..3319989 (-) 918 WP_007409774.1 tyrosine recombinase XerC -
  U6C02_RS16615 (U6C02_16615) trmFO 3320059..3321366 (-) 1308 WP_003154273.1 FADH(2)-oxidizing methylenetetrahydrofolate--tRNA-(uracil(54)-C(5))- methyltransferase TrmFO -

Sequence

Protein


Download         Length: 259 a.a.        Molecular weight: 29056.24 Da        Isoelectric Point: 4.6017

>NTDB_id=931536 U6C02_RS16595 WP_003154263.1 3316274..3317053(-) (codY) [Bacillus velezensis strain YM-3]
MALLQKTRIINSMLQAAAGKPVNFKEMAETLRDVIDSNIFVVSRRGKLLGYSINQQIENDRMKKMLEDRQFPEEYTRNLF
NVPETSSNLDINSEYTAFPVENRDLFQAGLTTIVPIIGGGERLGTLILSRLQDQFEDDDLILAEYGATVVGMEILREKAE
EIEEEARSKAVVQMAISSLSYSELEAIEHIFEELDGNEGLLVASKIADRVGITRSVIVNALRKLESAGVIESRSLGMKGT
YIKVLNNKFLIELENLKSH

Nucleotide


Download         Length: 780 bp        

>NTDB_id=931536 U6C02_RS16595 WP_003154263.1 3316274..3317053(-) (codY) [Bacillus velezensis strain YM-3]
ATGGCTTTACTACAAAAAACACGAATTATTAACAGCATGCTGCAGGCTGCGGCAGGCAAACCCGTAAACTTTAAAGAAAT
GGCTGAAACGCTTCGTGACGTCATTGATTCTAATATTTTCGTCGTCAGCCGCAGAGGAAAGCTTTTGGGCTACTCTATTA
ATCAGCAGATTGAAAATGACCGCATGAAAAAAATGCTTGAAGACCGCCAGTTCCCGGAAGAGTACACGAGAAATCTGTTC
AATGTTCCGGAGACGTCTTCAAACCTTGATATCAACAGCGAATACACGGCATTTCCTGTGGAAAACAGAGACCTGTTCCA
AGCGGGCTTAACAACGATCGTGCCGATCATCGGCGGAGGAGAGAGACTGGGCACGCTGATTCTGTCCCGTCTGCAGGATC
AATTTGAAGATGATGATCTCATTCTTGCTGAATACGGGGCAACCGTTGTAGGAATGGAGATTTTAAGAGAAAAAGCGGAA
GAAATCGAAGAAGAGGCGCGAAGCAAAGCGGTTGTTCAAATGGCGATCAGCTCTCTGTCTTACAGTGAACTTGAAGCGAT
TGAGCATATCTTTGAAGAGCTTGACGGAAACGAAGGCTTGCTCGTGGCAAGTAAAATTGCGGACCGTGTCGGCATTACGC
GTTCAGTAATCGTTAACGCGCTGAGAAAGCTGGAAAGCGCAGGCGTCATTGAATCCAGATCACTGGGTATGAAGGGGACG
TACATTAAAGTTCTGAACAACAAATTCCTTATTGAATTGGAAAACCTTAAATCTCATTAA

Domains

Predicted by InterproScan.

CodY GAF-like domain (CodY)

(3-178)

CodY helix-turn-helix domain (HTH_CodY)

(198-255)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB I2C545

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  codY Bacillus subtilis subsp. subtilis str. 168

99.228

100

0.992
  codY Lactococcus lactis subsp. lactis strain DGCC12653

47.843

98.456

0.471