Detailed information    

insolico Bioinformatically predicted

Overview

Name   codY   Type   Regulator
Locus tag   V2I11_RS08180 Genome accession   NZ_CP143783
Coordinates   1620346..1621125 (+) Length   259 a.a.
NCBI ID   WP_003154263.1    Uniprot ID   I2C545
Organism   Bacillus velezensis strain JSZ06     
Function   repression of comK (predicted from homology)   
Competence regulation

Genomic Context

Location: 1615346..1626125
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  V2I11_RS08160 trmFO 1616033..1617340 (+) 1308 WP_012117550.1 FADH(2)-oxidizing methylenetetrahydrofolate--tRNA-(uracil(54)-C(5))- methyltransferase TrmFO -
  V2I11_RS08165 xerC 1617410..1618327 (+) 918 WP_007409774.1 tyrosine recombinase XerC -
  V2I11_RS08170 hslV 1618343..1618888 (+) 546 WP_003154267.1 ATP-dependent protease subunit HslV -
  V2I11_RS08175 hslU 1618905..1620308 (+) 1404 WP_007611413.1 HslU--HslV peptidase ATPase subunit -
  V2I11_RS08180 codY 1620346..1621125 (+) 780 WP_003154263.1 GTP-sensing pleiotropic transcriptional regulator CodY Regulator
  V2I11_RS08185 flgB 1621479..1621868 (+) 390 WP_003154260.1 flagellar basal body rod protein FlgB -
  V2I11_RS08190 flgC 1621868..1622320 (+) 453 WP_007409776.1 flagellar basal body rod protein FlgC -
  V2I11_RS08195 fliE 1622331..1622651 (+) 321 WP_007409777.1 flagellar hook-basal body complex protein FliE -
  V2I11_RS08200 fliF 1622694..1624304 (+) 1611 WP_032874889.1 flagellar basal-body MS-ring/collar protein FliF -
  V2I11_RS08205 fliG 1624317..1625333 (+) 1017 WP_003154256.1 flagellar motor switch protein FliG -
  V2I11_RS08210 fliH 1625326..1626081 (+) 756 WP_032874891.1 flagellar assembly protein FliH -

Sequence

Protein


Download         Length: 259 a.a.        Molecular weight: 29056.24 Da        Isoelectric Point: 4.6017

>NTDB_id=931395 V2I11_RS08180 WP_003154263.1 1620346..1621125(+) (codY) [Bacillus velezensis strain JSZ06]
MALLQKTRIINSMLQAAAGKPVNFKEMAETLRDVIDSNIFVVSRRGKLLGYSINQQIENDRMKKMLEDRQFPEEYTRNLF
NVPETSSNLDINSEYTAFPVENRDLFQAGLTTIVPIIGGGERLGTLILSRLQDQFEDDDLILAEYGATVVGMEILREKAE
EIEEEARSKAVVQMAISSLSYSELEAIEHIFEELDGNEGLLVASKIADRVGITRSVIVNALRKLESAGVIESRSLGMKGT
YIKVLNNKFLIELENLKSH

Nucleotide


Download         Length: 780 bp        

>NTDB_id=931395 V2I11_RS08180 WP_003154263.1 1620346..1621125(+) (codY) [Bacillus velezensis strain JSZ06]
ATGGCTTTACTACAAAAAACACGAATTATTAACAGCATGCTGCAGGCTGCGGCAGGCAAACCCGTAAACTTTAAAGAAAT
GGCTGAAACGCTTCGTGACGTCATTGATTCTAATATTTTCGTCGTCAGCCGCAGAGGAAAGCTTTTGGGCTACTCTATTA
ATCAGCAGATTGAAAATGACCGCATGAAAAAAATGCTTGAAGACCGCCAGTTCCCGGAAGAGTACACGAGAAATCTGTTC
AATGTTCCGGAGACGTCTTCAAACCTTGATATCAACAGCGAATACACGGCGTTTCCTGTAGAAAACAGAGACCTGTTCCA
AGCGGGCTTAACAACGATCGTGCCGATCATCGGCGGAGGAGAGAGACTGGGCACGCTCATTCTGTCCCGTCTGCAGGATC
AATTTGAAGATGATGATCTCATTCTTGCTGAATACGGAGCAACCGTTGTAGGAATGGAGATTTTAAGAGAAAAAGCGGAA
GAAATCGAAGAAGAGGCGCGAAGCAAAGCGGTTGTTCAAATGGCGATCAGTTCTCTGTCTTACAGTGAACTTGAAGCGAT
TGAGCATATCTTTGAAGAGCTTGACGGAAACGAAGGCTTGCTTGTGGCAAGTAAGATTGCGGACCGTGTCGGCATTACGC
GTTCAGTAATCGTTAACGCGCTGAGAAAGCTGGAAAGCGCAGGCGTCATTGAATCCAGATCACTGGGAATGAAGGGGACG
TACATTAAAGTTCTGAACAACAAATTCCTTATTGAATTGGAAAACCTTAAATCTCATTAA

Domains

Predicted by InterproScan.

CodY GAF-like domain (CodY)

(3-178)

CodY helix-turn-helix domain (HTH_CodY)

(198-255)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB I2C545

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  codY Bacillus subtilis subsp. subtilis str. 168

99.228

100

0.992
  codY Lactococcus lactis subsp. lactis strain DGCC12653

47.843

98.456

0.471