Detailed information    

insolico Bioinformatically predicted

Overview

Name   sxy/tfoX   Type   Regulator
Locus tag   V1606_RS11895 Genome accession   NZ_CP143712
Coordinates   2463094..2463720 (+) Length   208 a.a.
NCBI ID   WP_022647658.1    Uniprot ID   A0A431SK42
Organism   Enterobacter hormaechei subsp. hoffmannii strain ECC-134     
Function   positive regulator of competence gene (predicted from homology)   
Competence regulation

Genomic Context

Location: 2458094..2468720
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  V1606_RS11875 (V1606_11880) - 2458493..2460253 (-) 1761 WP_022647656.1 Lon protease family protein -
  V1606_RS11880 (V1606_11885) matP 2460440..2460892 (+) 453 WP_006809347.1 macrodomain Ter protein MatP -
  V1606_RS11885 (V1606_11890) ompA 2460958..2462010 (-) 1053 WP_017694761.1 porin OmpA -
  V1606_RS11890 (V1606_11895) sulA 2462367..2462876 (-) 510 WP_032610196.1 SOS-induced cell division inhibitor SulA -
  V1606_RS11895 (V1606_11900) sxy/tfoX 2463094..2463720 (+) 627 WP_022647658.1 TfoX/Sxy family DNA transformation protein Regulator
  V1606_RS11900 (V1606_11905) yccS 2463677..2465839 (-) 2163 WP_022647659.1 YccS family putative transporter -
  V1606_RS11905 (V1606_11910) - 2465858..2466304 (-) 447 WP_022647660.1 YccF domain-containing protein -
  V1606_RS11910 (V1606_11915) helD 2466427..2468481 (+) 2055 WP_022647661.1 DNA helicase IV -

Sequence

Protein


Download         Length: 208 a.a.        Molecular weight: 23940.50 Da        Isoelectric Point: 9.4592

>NTDB_id=930845 V1606_RS11895 WP_022647658.1 2463094..2463720(+) (sxy/tfoX) [Enterobacter hormaechei subsp. hoffmannii strain ECC-134]
MKKISYDRIYQSQEYLSPLGEIHHRALFGGYTLAVDEAVFAMVSDGELYLRACEQSAKYCVKNASSVLTLMKRGRPVLLN
YYRVDEGLWQNREKLLQLSSFALDAARKERYQRHQRNRLKDLPNLTFQIEVLLMEAGITNEETLRQLGAKTSWLKMRSKN
KALSIRVLFALEGAIEGLHEAALPADIRRELTEWFNALPESQGHHSAR

Nucleotide


Download         Length: 627 bp        

>NTDB_id=930845 V1606_RS11895 WP_022647658.1 2463094..2463720(+) (sxy/tfoX) [Enterobacter hormaechei subsp. hoffmannii strain ECC-134]
ATGAAAAAGATATCTTATGATCGGATTTATCAATCTCAAGAATACCTCTCTCCGCTGGGCGAAATTCATCATCGCGCCCT
GTTTGGCGGTTATACCCTGGCCGTGGATGAAGCGGTGTTCGCGATGGTGTCTGACGGTGAGCTTTACCTTCGCGCCTGTG
AGCAAAGTGCAAAATACTGTGTAAAAAACGCGTCCTCTGTTCTGACCCTGATGAAACGAGGACGTCCTGTGCTGCTTAAT
TACTACCGTGTGGATGAAGGTCTGTGGCAAAACAGGGAAAAACTGCTTCAGCTCTCCTCGTTTGCGCTCGATGCCGCCAG
GAAAGAGCGCTACCAGCGCCATCAGCGTAACCGGCTTAAAGATCTGCCGAACCTGACCTTTCAGATTGAGGTCCTGCTTA
TGGAGGCGGGCATTACCAATGAAGAGACGCTACGACAGTTGGGGGCGAAGACGAGCTGGCTGAAAATGCGCTCTAAGAAT
AAAGCGCTGAGTATCCGGGTATTGTTCGCGCTTGAAGGCGCGATTGAAGGGTTACATGAAGCGGCACTCCCGGCGGATAT
TCGCCGGGAGCTTACGGAGTGGTTTAATGCGCTGCCTGAGTCGCAGGGCCATCATTCCGCCAGGTAG

Domains

Predicted by InterproScan.

TfoX C-terminal domain (TfoX_C)

(116-194)

TfoX N-terminal domain (TfoX_N)

(14-106)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A431SK42

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sxy/tfoX Escherichia coli BW25113 strain K-12

58.911

97.115

0.572