Detailed information    

insolico Bioinformatically predicted

Overview

Name   amiE   Type   Regulator
Locus tag   ACB343_RS08635 Genome accession   NZ_CP167012
Coordinates   1718166..1718840 (-) Length   224 a.a.
NCBI ID   WP_002982458.1    Uniprot ID   A0ABU0A9I5
Organism   Streptococcus pyogenes strain Isolate 17     
Function   internalize XIP (predicted from homology)   
Competence regulation

Genomic Context

Location: 1713166..1723840
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACB343_RS08620 (ACB343_08620) - 1714804..1716192 (-) 1389 WP_011285225.1 HAMP domain-containing sensor histidine kinase -
  ACB343_RS08625 (ACB343_08625) - 1716189..1716842 (-) 654 WP_002991237.1 response regulator transcription factor -
  ACB343_RS08630 (ACB343_08630) - 1716936..1718153 (-) 1218 WP_002993552.1 ABC transporter permease -
  ACB343_RS08635 (ACB343_08635) amiE 1718166..1718840 (-) 675 WP_002982458.1 ABC transporter ATP-binding protein Regulator
  ACB343_RS08640 (ACB343_08640) - 1718827..1720095 (-) 1269 WP_011285226.1 efflux RND transporter periplasmic adaptor subunit -
  ACB343_RS08645 (ACB343_08645) - 1720529..1720813 (-) 285 WP_002982442.1 hypothetical protein -
  ACB343_RS08650 (ACB343_08650) - 1720962..1721258 (-) 297 WP_011285228.1 DUF4298 domain-containing protein -
  ACB343_RS08655 (ACB343_08655) - 1721400..1723343 (-) 1944 WP_371399970.1 LPXTG cell wall anchor domain-containing protein -

Sequence

Protein


Download         Length: 224 a.a.        Molecular weight: 24826.67 Da        Isoelectric Point: 5.7977

>NTDB_id=930764 ACB343_RS08635 WP_002982458.1 1718166..1718840(-) (amiE) [Streptococcus pyogenes strain Isolate 17]
MLNLKDIRKSYHLGTEEFAILKGIDLEVNEGDFLAIMGPSGSGKSTLMNIIGCLDKPGSGSYAIEGRDVSSLSDNELADL
RNQKIGFVFQNFNLMPKLTACQNVELPLTYMNVPKKERRKRALEMLKLVGLEERSEFKPMELSGGQKQRVAIARALVTNP
SFILGDEPTGALDTKTSVQIMDLFKQFNDNGKTIIIITHEPEVAALCKKTVILRDGNIEHSDIE

Nucleotide


Download         Length: 675 bp        

>NTDB_id=930764 ACB343_RS08635 WP_002982458.1 1718166..1718840(-) (amiE) [Streptococcus pyogenes strain Isolate 17]
TTGTTAAACCTTAAAGATATTCGAAAAAGCTATCATCTTGGGACTGAAGAATTTGCGATTTTAAAAGGAATCGATTTAGA
AGTTAACGAGGGTGACTTTTTAGCCATCATGGGACCATCAGGTTCGGGAAAGTCAACATTGATGAATATCATTGGGTGTT
TAGATAAGCCTGGCTCTGGCTCATATGCCATTGAAGGCAGAGACGTGTCATCCTTATCTGATAATGAACTTGCTGATTTG
CGTAATCAAAAAATCGGCTTTGTTTTTCAAAACTTTAACCTGATGCCCAAGCTAACAGCTTGTCAAAATGTCGAATTGCC
CTTGACTTATATGAATGTTCCTAAAAAAGAGCGTCGCAAACGAGCGCTAGAGATGTTAAAGCTAGTAGGACTAGAAGAAC
GCAGTGAATTTAAACCGATGGAGCTATCTGGTGGGCAAAAACAGCGTGTAGCGATTGCAAGAGCTTTAGTCACTAACCCG
AGTTTTATCCTTGGTGATGAGCCAACAGGTGCACTAGACACAAAAACCAGCGTCCAAATCATGGACCTATTTAAACAATT
CAATGATAACGGCAAAACGATTATTATCATCACACACGAGCCTGAAGTAGCTGCCTTATGCAAAAAGACGGTGATCCTAA
GAGATGGTAATATAGAACATTCCGATATAGAGTAA

Domains

Predicted by InterProScan.

ABC transporter (ABC_tran)

(21-169)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  amiE Streptococcus salivarius strain HSISS4

34.454

100

0.366