Detailed information    

insolico Bioinformatically predicted

Overview

Name   amiE   Type   Regulator
Locus tag   ACB342_RS08290 Genome accession   NZ_CP167007
Coordinates   1652683..1653357 (-) Length   224 a.a.
NCBI ID   WP_371392639.1    Uniprot ID   -
Organism   Streptococcus pyogenes strain Isolate 24     
Function   internalize XIP (predicted from homology)   
Competence regulation

Genomic Context

Location: 1647683..1658357
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACB342_RS08275 (ACB342_08280) - 1649321..1650709 (-) 1389 WP_010922717.1 HAMP domain-containing sensor histidine kinase -
  ACB342_RS08280 (ACB342_08285) - 1650706..1651359 (-) 654 WP_002991237.1 response regulator transcription factor -
  ACB342_RS08285 (ACB342_08290) - 1651453..1652670 (-) 1218 WP_002993552.1 ABC transporter permease -
  ACB342_RS08290 (ACB342_08295) amiE 1652683..1653357 (-) 675 WP_371392639.1 ABC transporter ATP-binding protein Regulator
  ACB342_RS08295 (ACB342_08300) - 1653344..1654612 (-) 1269 WP_010922718.1 efflux RND transporter periplasmic adaptor subunit -
  ACB342_RS08300 (ACB342_08305) - 1655035..1655319 (-) 285 WP_002982442.1 hypothetical protein -
  ACB342_RS08305 (ACB342_08310) - 1655466..1655762 (-) 297 WP_002982439.1 DUF4298 domain-containing protein -
  ACB342_RS08310 (ACB342_08315) - 1656006..1656242 (+) 237 WP_011285231.1 hypothetical protein -
  ACB342_RS08315 (ACB342_08320) prsA 1656518..1657447 (-) 930 WP_010922719.1 peptidylprolyl isomerase PrsA -
  ACB342_RS08320 (ACB342_08325) - 1657927..1658232 (-) 306 WP_002993568.1 Spi family protease inhibitor -

Sequence

Protein


Download         Length: 224 a.a.        Molecular weight: 24816.63 Da        Isoelectric Point: 5.7977

>NTDB_id=930293 ACB342_RS08290 WP_371392639.1 1652683..1653357(-) (amiE) [Streptococcus pyogenes strain Isolate 24]
MLNLKDIRKSYHLGTEEFAILKGIDLEVNEGDFLAIMGPSGSGKSTLMNIIGCLDKPGSGSYAIEGRDVSSLSDNELADL
RNQKIGFVFQNFNLMPKLTACQNVELPLTYMNVPKKERRKRALEMLKLVGLEERSEFKPMELSGGQKQRVAIARALVTNS
SFILGDEPTGALDTKTSVQIMDLFKQFNDNGKTIIIITHEPEVAALCKKTVILRDGNIEHSDIE

Nucleotide


Download         Length: 675 bp        

>NTDB_id=930293 ACB342_RS08290 WP_371392639.1 1652683..1653357(-) (amiE) [Streptococcus pyogenes strain Isolate 24]
TTGTTAAACCTTAAAGATATTCGAAAAAGCTATCATCTTGGAACTGAAGAATTTGCGATTTTAAAAGGAATCGATTTAGA
AGTTAACGAGGGTGACTTTTTAGCCATCATGGGACCATCAGGTTCGGGAAAGTCAACATTGATGAATATCATTGGGTGTT
TAGATAAGCCTGGCTCTGGCTCATATGCCATTGAAGGCAGAGACGTGTCATCCTTATCTGATAATGAACTTGCTGATTTG
CGTAATCAAAAAATCGGCTTTGTTTTTCAAAATTTTAACCTGATGCCCAAGCTAACAGCTTGTCAAAATGTCGAATTACC
CTTGACTTATATGAATGTTCCTAAAAAAGAGCGTCGCAAACGAGCCCTAGAGATGTTAAAGCTAGTAGGACTAGAAGAAC
GTAGTGAATTTAAACCGATGGAGCTATCTGGTGGGCAAAAACAGCGTGTAGCGATTGCAAGAGCTTTAGTCACTAACTCG
AGTTTTATCCTTGGTGATGAGCCAACAGGTGCACTAGACACAAAAACCAGCGTCCAAATCATGGACCTATTTAAACAATT
CAATGATAACGGCAAAACGATTATTATCATCACACACGAGCCTGAAGTAGCTGCCCTATGCAAAAAGACGGTGATCCTAA
GAGATGGTAATATAGAACATTCCGATATAGAGTAA

Domains

Predicted by InterProScan.

ABC transporter (ABC_tran)

(21-169)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  amiE Streptococcus salivarius strain HSISS4

34.034

100

0.362